An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1401 - 1425 of 41884

  1. Disentangling the innate immune responses of intestinal epithelial cells and lamina propria cells to Salmonella Typhimurium infection in chickens

    • Frontiers in Microbiology
    • Salmonella enterica serovar Typhimurium (STm) is a major foodborne pathogen and poultry are a key reservoir of human infections. To understand the host responses to early stages of Salmonella infection in poultry, we infected 2D and 3D enteroids, the latter of which contains leukocytes, neurons, and mesenchymal cells that are characteristic of the lamina propria.

      • Bacterial pathogens
      • Salmonella
  2. Vibrio parahaemolyticus and Vibrio vulnificus in vitro biofilm dispersal from microplastics influenced by simulated human environment

    • Frontiers in Microbiology
    • Growing concerns exist regarding human ingestion of contaminated seafood that contains Vibrio biofilms on microplastics (MPs). One of the mechanisms enhancing biofilm related infections in humans is due to biofilm dispersion, a process that triggers release of bacteria from biofilms into the surrounding environment, such as the gastrointestinal tract of human hosts.

      • Bacterial pathogens
      • Vibrio
  3. Gut commensal bacteria exacerbate toxoplasmosis associated with TgSheepCHn5 (ToxoDB#2) and TgRedpandaCHn1 (ToxoDB#20) through Th1 immune response

    • Parasitology Research
    • Oral infection of mice with several strains of Toxoplasma gondii results in intestinal pathological lesions, which contributes to the invasion of this parasite. However, the exact mechanism is unclear, and only a few strains have been explored. Here, T. gondii TgSheepCHn5 and TgRedpandaCHn1 strains from sheep and red panda were evaluated.

      • Parasites
      • Toxoplasma gondii
  4. Use of Neutralizers to Improve Salmonella spp. Detection in Inhibitory Food Matrices

    • Food Analytical Methods
    • The use of right sample preparation protocols is critical when analyzing challenging matrices containing inhibitory compounds inhibiting Salmonella growth during pre-enrichment step. The use of right sample preparation protocols will not only avoid a false negative result, but it can also have a huge positive impact on laboratory operations, as it is used for every type of method (cultural, ELISA, or PCR), every day in every laboratory.

      • Bacterial pathogens
      • Salmonella
  5. Transcriptome Analysis of Deoxynivalenol (DON)-Induced Hepatic and Intestinal Toxicity in Zebrafish: Insights into Gene Expression and Potential Detoxification Pathways

    • Toxins
    • The effects of deoxynivalenol (DON, 50 µg/mL) on the zebrafish liver and intestine were studied. Differentially expressed genes (DEGs) from mRNA and lncRNA were analyzed by RNA seq. Gene Ontology (GO) and signaling pathways were studied where the top 30 DEGs of each type of RNA were involved.

      • Natural toxins
      • Mycotoxins
  6. Within-Host Diversity of Coagulase-Negative Staphylococci Resistome from Healthy Pigs and Pig Farmers, with the Detection of cfr-Carrying Strains and MDR-S. borealis

    • Antibiotics
    • The ecology and diversity of resistome in coagulase-negative staphylococci (CoNS) from healthy pigs and pig farmers are rarely available as most studies focused on the livestock-associated methicillin-resistant S. aureus.

      • Bacterial pathogens
      • Staphylococcus aureus
  7. Withdrawal time of danofloxacin and difloxacin and in vitro binding phenomenon to melanin in black‐boned silky fowl

    • Journal of Food Science
    • Abstract Fluoroquinolones are commonly used in poultry breeding. Few studies have evaluated the causes of serious drug residues in black‐boned silky fowl until enrofloxacin has been banned in black‐boned silky fowl breeding in the Chinese Veterinary Commission of Chinese Veterinary Pharmacopoeia (2020). However, similarly structured fluoroquinolones have not been studied in black‐boned silky fowl.

      • Chemical contaminants
      • Antibiotic residues
  8. Systematic review and meta‐analysis of the impact of decontamination interventions on the prevalence and concentration of Salmonella in broiler chickens during primary processing

    • International Journal of Food Science & Technology
    • Summary Systematic review and meta‐analysis aggregate quantitative data from different studies into unified effect size estimates with better statistical power in risk assessment model parameterization. This study uses systematic review and meta‐analysis to estimate Salmonella decontamination during broiler slaughter from scalding to post‐chilling, with meta‐regression applied to explore modifier variables.

      • Bacterial pathogens
      • Salmonella
  9. Fecal Microbiota Transplantation Reduces Campylobacter jejuni Colonization in Young Broiler Chickens Challenged by Oral Gavage but Not by Seeder Birds

    • Antibiotics
    • Campylobacter spp., particularly C. jejuni and C. coli, are major food safety concerns, transmitted to humans mainly via contaminated poultry meat. In a previous study, we found that some commercial broiler farms consistently produced Campylobacter-free flocks while others consistently reared Campylobacter-colonized flocks, and significant differences in the gut microbiota compositions between the two types of farm categories were revealed.

      • Bacterial pathogens
      • Campylobacter
  10. Plankton and marine aggregates as transmission vectors for V. aestuarianus 02/041 infecting the pacific oyster Crassostrea gigas

    • Environmental Microbiology Reports
    • Using controlled infection experiments this study provides evidence that incorporation into marine planktonic substrates (i.e., phytoplankton cells and, to a greater extent marine aggregates) significantly promote intake of the pathogenic bacterial strain V. aestuarianus 02/041 by the Pacific oyster Crassostrea gigas maintained under stressful conditions in the laboratory resulting in a compromised health status of the infected animals.

      • Bacterial pathogens
      • Vibrio
  11. Campylobacter jejuni Outbreak Linked to Raw Oysters in Rhode Island, 2021

    • Journal of Food Protection
    • Oysters and other shellfish are not a food that is commonly highlighted as high risk for Campylobacter contamination. The Rhode Island Department of Health (RIDOH) conducted a multiagency investigation of a Campylobacter jejuni outbreak that was linked to the consumption of raw oysters; the first such outbreak detected in Rhode Island. The environmental investigation identified birds as the likely source of contamination of the aquacultured oysters.

      • Bacterial pathogens
      • Campylobacter
  12. Prevalence of Blastocystis and Dientamoeba fragilis in diarrheal patients in Corum, Türkiye

    • Parasitology Research
    • To investigate the prevalence of Blastocystis and Dientamoeba fragilis in diarrhea patients and healthy individuals in Corum, Türkiye, fecal samples from 92 diarrhea patients and 50 healthy individuals were collected and evaluated using direct microscopy and molecular methods to screen for bacteria, protozoa, and viruses. The prevalence of Blastocystis was 24.6% in total and more frequent in the healthy group (30.0%).

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Parasites
      • Cryptosporidium parvum
      • Giardia lamblia
  13. A review of slaughter practices and their effectiveness to control microbial - esp. Salmonella spp. - contamination of pig carcasses

    • Journal of Food Protection
    • The BIOPIGEE project (part of the One Health European Joint Programme under Horizon 2020) aimed to identify relevant measures to effectively control Salmonella, and another zoonotic pathogen, hepatitis E virus (HEV) within the pig meat food chain. The aim of this study was to identify biosecurity measures or management practices that are relevant for limiting Salmonella and/or HEV occurrence and spread within pig slaughterhouses.

      • Bacterial pathogens
      • Salmonella
  14. Assessment of the application for renewal of the authorisation of a feed additive consisting of sodium hydroxide for dogs, cats and ornamental fish (Brenntag Holding GmbH and Electroquímica de Hernani, S.A.)

    • EFSA Journal
    • Abstract Following a request from the European Commission, the Panel on Additives and Products or Substances used in Animal Feed (FEEDAP) was asked to deliver a scientific opinion on the assessment of the application for renewal of authorisation of sodium hydroxide as a technological additive (acidity regulator) for dogs, cats and ornamental fish. The applicants have provided evidence that the additive currently on the market complies with the existing conditions of authorisation.

      • Chemical contaminants
      • Heavy Metals
  15. Predictive modeling of thermal inactivation of non-O157 Shiga toxin-producing Escherichia coli in ground beef with varying fat contents

    • Food Research International
    • A mathematical model to predict the thermal inactivation of non-O157 Shiga toxin-producing Escherichia coli (STEC) in ground beef was developed, with temperature and fat content of ground beef as controlling factors. Survival curves for a cocktail of non-O157 STEC strains in ground beef at four temperatures (55, 60, 65, and 68 °C) and six fat levels (5, 10, 15, 20, 25, and 30%) were generated.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  16. Enhancing remediation potential of heavy metal contaminated soils through synergistic application of microbial inoculants and legumes

    • Frontiers in Microbiology
    • Soil microorganisms play a crucial role in remediating contaminated soils in modern ecosystems. However, the potential of combining microorganisms with legumes to enhance the remediation of heavy metal-contaminated soils remains unexplored. To investigate this, we isolated and purified a highly efficient cadmium and lead-tolerant strain. Through soil-cultivated pot experiments with two leguminous plants (Robinia pseudoacacia L.

      • Chemical contaminants
      • Heavy Metals
  17. Shifts in the swine nasal microbiota following Bordetella bronchiseptica challenge in a longitudinal study

    • Frontiers in Microbiology
    • Bordetella bronchiseptica is a widespread, highly infectious bacterial pathogen that causes respiratory disease in swine and increases the severity of respiratory infections caused by other viral or bacterial pathogens. However, the impact of B. bronchiseptica infection on the swine respiratory microbiota has not been thoroughly investigated. Here, we aim to assess the influence of B. bronchiseptica infection on the community structure and abundance of members of the swine nasal microbiota.

      • Bacterial pathogens
      • Shigella
  18. The Clinical Efficacy of Multidose Oritavancin: A Systematic Review

    • Antibiotics
    • Oritavancin (ORI) is a semisynthetic lipoglycopeptide approved as a single 1200 mg dose intravenous infusion for the treatment of acute bacterial skin and skin structure infections (ABSSSIs) caused by Gram-positive organisms in adults. The pharmacokinetic/pharmacodynamic (PK/PD) linear kinetic profile and long terminal half-life (~393 h) of ORI make it therapeutically attractive for the treatment of other Gram-positive infections for which prolonged therapy is needed.

      • Bacterial pathogens
      • Staphylococcus aureus
  19. Prevalence and subtype characterization of Campylobacter in ceca of commercial broiler chickens at processing – a 452 flock, seven-year survey

    • Journal of Food Protection
    • Human Campylobacter infections have been associated with chicken and other poultry meat products. Environmental conditions such a temperature and season can affect Campylobacter recoverability from chicken meat products.

      • Bacterial pathogens
      • Campylobacter
  20. Draft genome sequences of four Staphylococcus hyicus strains, SC302, SC304, SC306, and SC310, isolated from swine from Eastern Canada

    • Microbiology Resource Announcements
    • Microbiology Resource Announcements, Ahead of Print. The bacterium Staphylococcus hyicus causes porcine exudative epidermitis in piglets, which represents both health and welfare concerns. Few genome sequences of this pathogen are published. We provide four additional ones to help future genomic analysis of S. hyicus. These are genomes of strains isolated from Canadian swine.

      • Bacterial pathogens
      • Staphylococcus aureus
  21. Genomic insights into antimicrobial potential and optimization of fermentation conditions of pig-derived Bacillus subtilis BS21

    • Frontiers in Microbiology
    • Bacillus spp. have been widely used as probiotic supplements in animal feed as alternatives to antibiotics. In the present study, we screened a Bacillus subtilis strain named BS21 from pig feces. Antimicrobial activities, whole genome mining and UHPLC-MS/MS analysis were used to explore its antimicrobial mechanism.

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Staphylococcus aureus
  22. Analysis of gut bacteriome of in utero arsenic-exposed mice using 16S rRNA-based metagenomic approach

    • Frontiers in Microbiology
    • Introduction

      Approximately 200 million people worldwide are affected by arsenic toxicity emanating from the consumption of drinking water containing inorganic arsenic above the prescribed maximum contaminant level. The current investigation deals with the role of prenatal arsenic exposure in modulating the gut microbial community and functional pathways of the host.

      Method

      • Chemical contaminants
      • Heavy Metals
  23. Biofilm formation in food processing plants and novel control strategies to combat resistant biofilms: the case of Salmonella spp.

    • Food Science and Biotechnology
    • Salmonella is one of the pathogens that cause many foodborne outbreaks throughout the world, representing an important global public health problem. Salmonella strains with biofilm-forming abilities have been frequently isolated from different food processing plants, especially in poultry industry.

      • Bacterial pathogens
      • Salmonella
  24. Study of chemical constituents, antioxidants and antimicrobial activities of Tamarindus indica L. seed

    • Journal of Food Science
    • Abstract The fruits of Tamarindus indica L. are consumed worldwide, with various parts of the plant being used for medicinal purposes. The residues (pericarp and seeds) generated during cellulose processing are of significant value as they contain bioactive compounds with diverse biological activities.

      • Bacterial pathogens
      • Bacillus cereus
      • Salmonella
      • Staphylococcus aureus
  25. Comparative evaluation of antimicrobial activity of human granulysin, bovine and porcine NK-lysins against Shiga toxin-producing Escherichia coli O157:H7

    • PLOS ONE
    • by Erika N. Biernbaum, Rohana P. Dassanayake, Eric M. Nicholson, Indira T. Kudva Shiga toxin-producing Escherichia coli (STEC) O157:H7 (O157) is a foodborne pathogen causing human disease ranging from hemorrhagic colitis and hemolytic uremic syndrome to kidney failure, while remaining harmless to cattle, its primary reservoir.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli