An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 976 - 1000 of 18815

  1. Optimizing postbiotic production through solid-state fermentation with Bacillus amyloliquefaciens J and Lactiplantibacillus plantarum SN4 enhances antibacterial, antioxidant, and anti-inflammatory activities

    • Frontiers in Microbiology
    • Background Postbiotics are an emerging research interest in recent years and are fairly advanced compared to prebiotics and probiotics. The composition and function of postbiotics are closely related to fermentation conditions. Methods In this study, we developed a solid-state fermentation preparation method for postbiotics with antimicrobial, antioxidant, and anti-inflammatory activities.

      • Bacterial pathogens
      • Salmonella
      • Staphylococcus aureus
  2. Analysis of reservoir sources of Campylobacter isolates to free-range broilers in Denmark

    • Poultry Science
    • Campylobacter is a common cause of food poisoning in many countries, with broilers being the main source. Organic and free-range broilers are more frequently Campylobacter-positive than conventionally raised broilers and may constitute a higher risk for human infections.

      • Bacterial pathogens
      • Campylobacter
  3. Genotypes and virulence factors in Staphylococcus aureus isolated from dairy cows with subclinical mastitis in Serbia

    • Comparative Immunology, Microbiology and Infectious Diseases
    • This study aimed to determine the prevalence of Staphylococcus aureus subclinical mastitis and to genotype the S. aureus isolates using the 16S-23S rRNA intergenic spacer (RS-PCR) method. In addition, the genes responsible for adherence, biofilm formation, host evasion, tissue necrosis, methicillin resistance, and enterotoxin production of S. aureus were investigated. The overall prevalence of S.

      • Bacterial pathogens
      • Staphylococcus aureus
  4. Phenotypic and genomic analyses of bacteriocin-producing probiotic Enterococcus faecium EFEL8600 isolated from Korean soy-meju

    • Frontiers in Microbiology
    • Enterococcus faecium is a prevalent species found in fermented soybean products, known for its contributions to flavor development and inhibition of pathogenic microorganisms during fermentation. This study aims to provide comprehensive phenotypic and genomic evidence supporting the probiotic characteristics of E. faecium EFEL8600, a bacteriocin-producing strain isolated from Korean soy-meju.

      • Bacterial pathogens
      • Listeria monocytogenes
  5. Navigating the Complexities Involving the Identification of Botulinum Neurotoxins (BoNTs) and the Taxonomy of BoNT-Producing Clostridia

    • Toxins
    • Botulinum neurotoxins are a varied group of protein toxins that share similar structures and modes of activity. They include at least seven serotypes and over forty subtypes that are produced by seven different clostridial species. These bacterial species are not limited strictly to BoNT-producers as neuro-toxigenic and non-neuro-toxigenic members have been identified within each species.

      • Bacterial pathogens
      • Clostridium botulinum
  6. Antibacterial properties of peptides from chia (Salvia hispanica L.) applied to pork meat preservation

    • Journal of Food Science
    • Abstract Chia‐derived peptides might represent a novel alternative to conventional preservatives in food. Despite the antibacterial potential of these molecules, their food application is still limited. This study aimed to evaluate chia‐derived peptides' antibacterial and antibiofilm potential in food preservation.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Salmonella
      • Staphylococcus aureus
  7. Effects of steam explosion treatment on the physicochemical properties and biological activities of okara‐derived soluble dietary fiber

    • International Journal of Food Science & Technology
    • Summary Okara is the by‐product of soybean during processing, which is rich in dietary fiber. In this study, the effects of steam explosion (SE) treatment on the physicochemical properties and biological activities of soluble dietary fiber (SDF) from okara was investigated. Results showed that SE increased the water‐holding capacity, oil‐holding capacity, swelling capacity, water solubility, foaming ability, foaming stability, emulsifying activity and emulsion stability of SDF.

      • Bacterial pathogens
      • Shigella
  8. Effects of nisin on bacterial community and fermentation profiles, in vitro rumen fermentation, microbiota, and methane emission of alfalfa silage

    • Journal of the Science of Food and Agriculture
    • Abstract BACKGROUND Alfalfa (Medicago sativa L.) has been used widely in preparing silage. However, forage legumes are prone to contamination by spoilage bacteria during fermentation. Nisin has broad‐spectrum antibacterial properties and has been applied as an inhibitor of rumen methane emissions. However, little research has been carried out on the application of nisin in silage.

      • Bacterial pathogens
      • Vibrio
  9. Perturbations of gut microbiome and metabolome of pigs infected with Mycoplasma hyorhinis

    • Journal of the Science of Food and Agriculture
    • Abstract Background Mycoplasma hyorhinis is a prevalent respiratory pathogen in swine, causing significant economic loss to pig producers. There is growing evidence that respiratory pathogen infections have a large impact on intestinal microecology. To study the effect of M. hyorhinis infection on gut microbial composition and metabolome profile, pigs were infected with M. hyorhinis.

      • Bacterial pathogens
      • Campylobacter
  10. Decimal reduction time and inactivation rate of Vibrio vulnificus and Vibrio parahaemolyticus in oyster meat by cryogenic freezing (CF) and air blast-freezing (AB) and their impact on oyster meat quality and microstructure

    • Journal of Food Engineering
    • Raw oyster meats may be contaminated with Vibrio parahaemolyticus and V. vulnificus. These Vibrio species have been strongly associated with severe and life-threatening conditions in immunocompromised individuals. Post-harvest treatment, such as freezing, affects Vibrio species present in oyster meats and the quality of oysters.

      • Bacterial pathogens
      • Vibrio
  11. Investigating desiccation resistance, post-rehydration growth, and heat tolerance in desiccation-injured cells of Salmonella enterica isolated from the soybean production chain

    • International Journal of Food Microbiology
    • This study compared the resistance to different desiccation conditions of 190 Salmonella enterica strains previously isolated from the soybean meal production chain and belonging to 23 

      • Bacterial pathogens
      • Salmonella
  12. Commercial-scale application of thermal trap technology for external disinfection of shell eggs from Salmonella

    • Food Control
    • Salmonella is a zoonotic pathogen that is commonly transmitted through food. External disinfection of shell eggs is of crucial importance to health in reducing egg-borne salmonellosis, because Salmonella on shells can be easily transmitted to other food products or infect food handlers. A new thermal treatment was developed for the inactivation of Salmonella Enterica on shell eggs.

      • Bacterial pathogens
      • Salmonella
  13. Validation of the CompactDry “Nissui” BC for Enumeration of Bacillus cereus in a Variety of Foods: AOAC Performance Tested MethodSM 092201

    • Journal of AOAC INTERNATIONAL
    • Background The CompactDry “Nissui” BC is a ready-to-use dry media sheet using a chromogenic medium with selective agents for the detection and enumeration of Bacillus cereus in products after incubation at 30 ± 1°C for 24 ± 2 h. Objective The CompactDry “Nissui” BC method was validated to achieve AOAC Performance Tested MethodsSM certification.

      • Bacterial pathogens
      • Bacillus cereus
  14. Validation of the Thermo Scientific™ SureTect™ Vibrio cholerae, Vibrio parahaemolyticus, and Vibrio vulnificus PCR Assay for the Detection of Vibrio cholerae, Vibrio parahaemolyticus, and Vibrio vulnificus in Seafood Matrixes: AOAC Performance Tested Meth

    • Journal of AOAC INTERNATIONAL
    • Background The Thermo Scientific™ SureTect™ Vibrio cholerae, Vibrio parahaemolyticus, and Vibrio vulnificus PCR Assay method is a real-time PCR method for the multiplex detection of Vibrio cholerae, Vibrio parahaemolyticus, and Vibrio vulnificus in seafood. Objective The Thermo Scientific SureTect Vibrio cholerae, Vibrio parahaemolyticus, and Vibrio vulnificus Assay was evaluated for AOAC Performance Tested MethodsSM certification.

      • Bacterial pathogens
      • Vibrio
  15. Development of Recombinase Aided Amplification (RAA)-Exo-Probe Assay for the Rapid Detection of Shiga Toxin-Producing Escherichia coli

    • Journal of AOAC INTERNATIONAL
    • Background Shiga toxin-producing Escherichia coli (STEC) is a significant cause of foodborne illness causing various gastrointestinal diseases including hemolytic uremic syndrome (HUS), the most severe form, which can lead to kidney failure or even death. Objective Here, we report the development of recombinase aided amplification (RAA)-exo-probe assays targeting the stx1 and stx2 genes for the rapid detection of STEC in food samples.

      • Bacterial pathogens
      • Escherichia coli O157:H7
  16. Research Note: Changes in pathogenic characteristics and drug resistance of Salmonella in poultry meat in Jiading District, Shanghai from 2019 to 2021

    • Poultry Science
    • To investigate the contamination status, serotype distribution, and drug resistance of Salmonella in poultry sold in Jiading District, Shanghai.

      • Bacterial pathogens
      • Salmonella
  17. Incentives for Salmonella control in chicken broilers: Why the sampling protocol matters

    • Food Control
    • Better control of Salmonella in chicken has been a public health priority at the Food Safety Inspection Service (FSIS) in the U.S. and public health agencies worldwide. Testing for Salmonella in chicken carcasses and enforcement of a standard has been a central feature of the FSIS Salmonella-control program.

      • Bacterial pathogens
      • Salmonella
  18. Diversity and probiotic characterisation of yeast isolates in the bovine gastrointestinal tract

    • Antonie van Leeuwenhoek
    • The use of yeasts as a feed supplement for cattle can promote animal development and performance. However, for the positive results to be consistent, strains with probiotic properties must be selected. The objective of this study was to isolate and identify yeasts present in the bovine feces and evaluate their probiotic potential together with strains previously isolated from the rumen (preliminary study).

      • Bacterial pathogens
      • Clostridium perfringens
  19. Inactivation of Salmonella and Shiga-toxin producing Escherichia coli on soft wheat kernels using vacuum steam pasteurization

    • International Journal of Food Microbiology
    • Wheat, the raw material for flour milling, can be contaminated with enteric pathogens, leading to outbreaks linked to flour. In previous lab-scale studies, vacuum steam treatment was able to reduce Salmonella Enteritidis PT30 and Shiga-toxin producing E.

      • Bacterial pathogens
      • Salmonella
  20. Fish collagen peptides' modulating effect on human skin microbiota against pathogenic Staphylococcus aureus

    • Future Microbiology
    • Aim: The current research aims to design effective strategies to enhance the body's immune system against pathogenic bacteria. Methods: Skin commensals were isolated, identified and cultured in fish collagen peptides (FCPs). Results: After culturing in FCP, the skin commensals were used in a dose-dependent manner for Staphylococcus aureus in a dual-culture test, which showed significant growth inhibition of the pathogenic bacteria, which conclu

      • Bacterial pathogens
      • Staphylococcus aureus
  21. Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producing Escherichia coli in enriched agricultural water

    • Frontiers in Microbiology
    • Culture-independent metagenomic sequencing of enriched agricultural water could expedite the detection and virulotyping of Shiga toxin-producing Escherichia coli (STEC). We previously determined the limits of a complete, closed metagenome-assembled genome (MAG) assembly and of a complete, fragmented MAG assembly for O157:H7 in enriched agricultural water using long reads (Oxford Nanopore Technologies, Oxford), which were 107 and 105 CFU/ml, respectively.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
      • Escherichia coli O157:H7
  22. Characterization of Shiga toxin‐producing Escherichia coli bacteriophages isolated from agricultural environments and examination of their prevalence with bacterial hosts

    • Journal of Food Safety
    • This study focuses on the characterization of STEC‐specific bacteriophages isolated from cow manure samples and examines their prevalence with STEC bacterial hosts. The findings indicate that the most common bacteriophages were specific to O26, and the presence of bacteriophages may have contributed to the diversity of their STEC host populations in the natural environment.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  23. Evaluating a Salmonella Typhimurium, Eimeria maxima, and Clostridium perfringens coinfection necrotic enteritis model in broiler chickens: repeatability, dosing, and immune outcomes

    • Poultry Science
    • Coccidiosis and necrotic enteritis negatively impact poultry production, making challenge model repeatability important for evaluating mitigation strategies.

      • Bacterial pathogens
      • Clostridium perfringens
      • Salmonella
  24. Listeria monocytogenes in ready to eat meat products from Zambia: phenotypical and genomic characterization of isolates

    • Frontiers in Microbiology
    • The contamination of ready to eat foods (RTE) products due to Listeria monocytogenes could compromise the products safety becoming a great risk for the consumers. The high presence of L. monocytogenes in RTE products has been described worldwide, but few data are available about these products from African countries. The aims of this study were to report the presence of L.

      • Bacterial pathogens
      • Listeria monocytogenes
  25. Development of a novel visual assay for ultrasensitive detection of Listeria monocytogenes in milk and chicken meat harnessing helix loop-mediated isothermal amplification (HAMP)

    • Food Control
    • Listeria monocytogenes causes foodborne listeriosis, which is an important food safety and public health problem. Monitoring them in the food chain using simple and affordable methods is of paramount importance to avoid untoward consequences.

      • Bacterial pathogens
      • Listeria monocytogenes