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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 16 of 16

  1. Spatial and Genomic Data to Characterize Endemic Typhoid Transmission

    • Clinical Infectious Diseases
    • Background Diverse environmental exposures and risk factors have been implicated in the transmission of Salmonella Typhi, but the dominant transmission pathways through the environment to susceptible humans remain unknown. Here, we use spatial, bacterial genomic, and hydrological data to refine our view of typhoid transmission in an endemic setting.

      • Bacterial pathogens
      • Salmonella
  2. Enteric Illness Outbreaks Reported Through the National Outbreak Reporting System—United States, 2009–2019

    • Clinical Infectious Diseases
    • Background The National Outbreak Reporting System (NORS) captures data on foodborne, waterborne, and enteric illness outbreaks in the United States. This study describes enteric illness outbreaks reported during 11 years of surveillance. Methods We extracted finalized reports from NORS for outbreaks occurring during 2009–2019.

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
      • Shigella
      • Viruses
      • Norovirus
  3. Investigating the Meat Pathway as a Source of Human Nontyphoidal Salmonella Bloodstream Infections and Diarrhea in East Africa

    • Clinical Infectious Diseases
    • Background Salmonella Enteritidis and Salmonella Typhimurium are major causes of bloodstream infection and diarrheal disease in East Africa. Sources of human infection, including the role of the meat pathway, are poorly understood. Methods We collected cattle, goat, and poultry meat pathway samples from December 2015 through August 2017 in Tanzania and isolated Salmonella using standard methods.

      • Salmonella
      • Bacterial pathogens
  4. Characteristics of Salmonella Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study

    • Clinical Infectious Diseases
    • Background The Global Enteric Multicenter Study (GEMS) determined the etiologic agents of moderate-to-severe diarrhea (MSD) in children under 5 years old in Africa and Asia. Here, we describe the prevalence and antimicrobial susceptibility of nontyphoidal Salmonella (NTS) serovars in GEMS and examine the phylogenetics of Salmonella Typhimurium ST313 isolates.

      • Salmonella
      • Bacterial pathogens
  5. Reply to Aung et al

    • Clinical Infectious Diseases
    • To the Editor—Symptomatic malaria is predominantly a disease of childhood in areas of higher transmission (ie, much of sub-Saharan Africa). Most cases of severe malaria occur in children aged <5 years. In these regions, both malaria and sepsis are major causes of childhood death, yet the clinical distinction between the 2 is difficult, particularly if there is no obvious focus of infection [1].

      • Salmonella
      • Bacterial pathogens
  6. Burden of Ileal Perforations Among Surgical Patients Admitted in Tertiary Care Hospitals of Three Asian countries: Surveillance of Enteric Fever in Asia Project (SEAP), September 2016–September 2019

    • Clinical Infectious Diseases
    • Background Typhoid fever is caused by Salmonella enterica subspecies enterica serovar Typhi (S. Typhi) and can lead to systemic illness and complications. We aimed to characterize typhoid-related ileal perforation in the context of the population-based Surveillance of Enteric Fever in Asia Project (SEAP) in Bangladesh, Nepal and Pakistan.

      • Salmonella
      • Bacterial pathogens
  7. Antimicrobial Resistance in Typhoidal Salmonella: Surveillance for Enteric Fever in Asia Project, 2016–2019

    • Clinical Infectious Diseases
    • Background Clinicians have limited therapeutic options for enteric as a result of increasing antimicrobial resistance, and therefore typhoid vaccination is recommended as a preventive measure. As a part of the Surveillance for Enteric Fever in Asia Project (SEAP), we investigated the extent measured the burden of antimicrobial resistance (AMR) among confirmed enteric fever cases in Bangladesh, Nepal, and Pakistan.

      • Salmonella
      • Bacterial pathogens
  8. Diagnostic Value of Clinical Features to Distinguish Enteric Fever From Other Febrile Illnesses in Bangladesh, Nepal, and Pakistan

    • Clinical Infectious Diseases
    • Background Enteric fever, a bacterial infection caused by Salmonella enterica serotypes Typhi and Paratyphi A, frequently presents as a nonlocalizing febrile illness that is difficult to distinguish from other infectious causes of fever. Blood culture is not widely available in endemic settings and, even when available, results can take up to 5 days.

      • Salmonella
      • Bacterial pathogens
  9. Phylogenetic Analysis Indicates a Longer Term Presence of the Globally Distributed H58 Haplotype of Salmonella Typhi in Southern India

    • Clinical Infectious Diseases
    • Background Typhoid fever caused by Salmonella Typhi is a major public health concern in low-/middle-income countries. A recent study of 1900 global S. Typhi indicated that South Asia might be the site of the original emergence of the most successful and hypervirulent clone belonging to the 4.3.1 genotype. However, this study had limited samples from India. Methods We analyzed 194 clinical S.

      • Salmonella
      • Bacterial pathogens
  10. Surveillance for Invasive Salmonella Disease in Bamako, Mali, From 2002 to 2018

    • Clinical Infectious Diseases
    • Background Salmonella enterica bloodstream infections are an important cause of childhood morbidity and mortality, including in Mali. We report 17 years of surveillance for nontyphoidal and typhoidal S. enterica infections among inpatients and outpatients at l’Hôpital Gabriel Touré, the main source of pediatric tertiary care in Bamako, Mali.

      • Salmonella
      • Bacterial pathogens
  11. Review on the Recent Advances on Typhoid Vaccine Development and Challenges Ahead

    • Clinical Infectious Diseases
    • Control of Salmonella enterica serovar typhi (S. typhi), the agent of typhoid fever, continues to be a challenge in many low- and middle-income countries. The major transmission route of S. typhi is fecal-oral, through contaminated food and water; thus, the ultimate measures for typhoid fever prevention and control include the provision of safe water, improved sanitation, and hygiene.

      • Salmonella
      • Bacterial pathogens
  12. Assessing the Feasibility of Typhoid Elimination

    • Clinical Infectious Diseases
    • In 1993, the International Task Force on Disease Eradication classified the political will for typhoid eradication as “none.” Here we revisit the Task Force’s assessment in light of developments in typhoid vaccines and increasing antimicrobial resistance in Salmonella Typhi that have served to increase interest in typhoid elimination.

      • Salmonella
      • Bacterial pathogens
  13. Tenacious Endemic Typhoid Fever in Samoa

    • Clinical Infectious Diseases
    • Background Typhoid fever has been endemic on the island nation of Samoa (2016 population, 195 979) since the 1960s and has persisted through 2019, despite economic development and improvements in water supply and sanitation. Methods Salmonella enterica serovar Typhi isolates from the 2 hospitals with blood culture capability and matched patient demographic and clinical data from January 2008 through December 2019 were analyzed.

      • Salmonella
      • Bacterial pathogens
  14. Domestic River Water Use and Risk of Typhoid Fever: Results From a Case-control Study in Blantyre, Malawi

    • Clinical Infectious Diseases
    • Background Typhoid fever remains a major cause of morbidity and mortality in low- and middle-income settings. In the last 10 years, several reports have described the reemergence of typhoid fever in southern and eastern Africa, associated with multidrug-resistant H58 Salmonella Typhi. Here, we identify risk factors for pediatric typhoid fever in a large epidemic in Blantyre, Malawi. Methods A case-control study was conducted between April 2015 and November 2016.

      • Salmonella
      • Bacterial pathogens
  15. Extended-spectrum β-Lactamase Acquisition in Patients Receiving Systemic Cephalosporin Treatment for Salmonella spp. and Shigella spp. Infection

    • Clinical Infectious Diseases
    • To the Editor—Salmonella spp. and Shigella spp. are major gastrointestinal pathogens. Although extended-spectrum β-lactamase (ESBL)–mediated resistance to cephalosporins is common in Escherichia coli [1], it remains rare in infections with enteric pathogens. Consequently, current recommendations for treating these infections include cephalosporins [2]. Here we report 3 cases of ESBL emergence within 6–49 days after cephalosporin therapy.

      • Salmonella
      • Shigella
      • Bacterial pathogens
  16. Performance of Stool-testing Recommendations for Acute Gastroenteritis When Used to Identify Children With 9 Potential Bacterial Enteropathogens

    • Clinical Infectious Diseases
    • Background The ability to identify bacterial pathogens that necessitate specific clinical management or public health action in children with acute gastroenteritis is crucial to patient care and public health. However, existing stool-testing guidelines offer inconsistent recommendations, and their performance characteristics are unknown.

      • Vibrio
      • Campylobacter
      • Bacterial pathogens
      • Salmonella
      • Shigella