An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 776 - 800 of 4122

  1. Research Paper Sunlight Parameters Influence the Survival and Decline of Salmonella and Escherichia coli in Water

    • The effect of variations in temperature, ultraviolet (UV) radiation, and sunlight intensity on generic Escherichia coli , E. coli O157:H7, Salmonella Newport and antibiotic resistant (ABR) variants of E. coli O157:H7 and S . Newport exposed to sunlight was evaluated. Bacterial strains suspended in sterile deionized water at a concentration of 8 log CFU/ml were exposed to sunlight on three different days for 180 min; control treatments were stored in the dark.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
      • Escherichia coli O157:H7
      • Salmonella
  2. WGS-Based Lineage and Antimicrobial Resistance Pattern of Salmonella Typhimurium Isolated during 2000–2017 in Peru

    • Antibiotics
    • Salmonella Typhimurium is associated with foodborne diseases worldwide, including in Peru, and its emerging antibiotic resistance (AMR) is now a global public health problem. Therefore, country-specific monitoring of the AMR emergence is vital to control this pathogen, and in these aspects, whole genome sequence (WGS)—based approaches are better than gene-based analyses.

      • Bacterial pathogens
      • Salmonella
  3. BaeR overexpression enhances the susceptibility of acrB deleted Salmonella enterica serovar Typhimurium to polymyxin

    • Veterinary Microbiology
    • The mechanism of polymyxin resistance is complex, and the modification of lipopolysaccharide mediated by two-component system is one of the main cause of polymyxin reistance. To date, no studies have reported the contribution of the BaeSR two-component system to the polymyxin resistance of Salmonella.

      • Bacterial pathogens
      • Salmonella
  4. Co-culture with Acinetobacter johnsonii enhances benzalkonium chloride resistance in Salmonella enterica via triggering lipid A modifications

    • International Journal of Food Microbiology
    • Salmonella enterica is one of the leading causes of foodborne gastroenteritis worldwide. In the food production environment, many bacterial species co-exist on surfaces in biofilm structures, which can act as reservoirs of microbial contamination of food products. Polymicrobial biofilms have been shown to have greater tolerance to antimicrobials, such as disinfectants, however the mechanistic basis of this is poorly understood. In this study, S.

      • Bacterial pathogens
      • Salmonella
  5. Genome Sequences of 18 Salmonella enterica Serotype Hadar Strains Collected from Patients in the United States

    • Microbiology Resource Announcements
    • Microbiology Resource Announcements, Ahead of Print. Despite being linked to a number of recent poultry-associated outbreaks in the United States, few reference genomes are available for Salmonella enterica serotype Hadar. Here, we address this need by reporting 18 Salmonella Hadar genomes from samples collected from patients in the United States between 2014 and 2020.

      • Bacterial pathogens
      • Salmonella
  6. CRISPR Cas12a‐based “sweet” biosensor coupled with personal glucose meter readout for the point‐of‐care testing of Salmonella

    • Journal of Food Science
    • Journal of Food Science, EarlyView. Salmonella is a pathogen that comes from different animal-originated foods and poses a significant threat to human health. The present detection methods for Salmonella are time-consuming and labor-intensive and requires skilled workers and specialized instruments.

      • Bacterial pathogens
      • Salmonella
  7. Green Synthesis of Silver Nanoparticles Using Pecan Nut (Carya illinoinensis) Shell Extracts and Evaluation of Their Antimicrobial Activity

    • Antibiotics
    • Nowadays, the increase in bacteria resistant to multiple antibiotics has become a real threat to the human health, forcing researchers to develop new strategies. Silver nanoparticles (AgNPs) may be a viable solution to this problem. The green synthesis of AgNPs is considered a green, ecological and low-priced process that provides small and biocompatible nanostructures with antimicrobial activity with a potential application in medicine.

      • Bacterial pathogens
      • Salmonella
      • Staphylococcus aureus
  8. The response of cecal microbiota to inflammatory state induced by Salmonella enterica serovar Enteritidis

    • Frontiers in Microbiology
    • By combining the experiments of reciprocal crosses of chicken infected with Salmonella enterica serovar Enteritidis (S. Enteritidis), we focused on the common response of cecal microbiota to an inflammatory state in respect of transcriptome and microbiome. The inoculation of S. Enteritidis improved the microbial diversity and promoted the microbiota evolution in our infection model.

      • Bacterial pathogens
      • Salmonella
      • Shigella
  9. Occurrence of foodborne pathogens in Italian soft artisanal cheeses displaying different intra- and inter-batch variability of physicochemical and microbiological parameters

    • Frontiers in Microbiology
    • Artisanal cheeses are produced in small-scale production plants, where the lack of full automation and control of environmental and processing parameters suggests a potential risk of microbial contamination. The aim of this study was to perform a longitudinal survey in an Italian artisanal factory producing a spreadable soft cheese with no rind to evaluate the inter- and intra-batch variability of physicochemical and microbial parameters on a total of 720 environmental and cheese samples.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Salmonella
      • Staphylococcus aureus
  10. The Detection of Potential Native Probiotics Lactobacillus spp. against Salmonella Enteritidis, Salmonella Infantis and Salmonella Kentucky ST198 of Lebanese Chicken Origin

    • Antibiotics
    • Salmonella continues to be a major threat to public health, especially with respect to strains from a poultry origin. In recent years, an increasing trend of antimicrobial resistance (AMR) in Salmonella spp. was observed due to the misuse of antibiotics. Among the approaches advised for overcoming AMR, probiotics from the Lactobacillus genus have increasingly been considered for use as effective prophylactic and therapeutic agents belonging to the indigenous microbiota.

      • Bacterial pathogens
      • Salmonella
  11. The activity of BcsZ of Salmonella Typhimurium and its role in Salmonella-plants interactions

    • Frontiers in Cellular and Infection Microbiology
    • Salmonella enterica is one of the most common human pathogens associated with fresh produce outbreaks. The present study suggests that expression of BcsZ, one of the proteins in the bcs complex, enhances the survival of Salmonella Typhimurium on parsley. BcsZ demonstrated glucanase activity with the substrates carboxymethylcellulose and crystalline cellulose, and was responsible for a major part of the S. Typhimurium CMCase activity.

      • Bacterial pathogens
      • Salmonella
  12. A Wash of Ethyl Acetoacetate Reduces Externally added Salmonella enterica on Tomatoes

    • Antibiotics
    • The continuously high numbers of food-borne disease outbreaks document that current intervention techniques are not yet satisfactory. This study describes a novel wash for tomatoes that can be used as part of the food processing chain and is designed to prevent contamination with serovars of Salmonella enterica. The wash contains ethyl acetoacetate (EAA) at a concentration of 8% in H2O. This wash reduced live bacterial counts (on Salmonella Shigella agar) of externally added S.

      • Bacterial pathogens
      • Salmonella
      • Shigella
  13. Rapid and automatic Salmonella typhimurium detection integrating continuous-flow magnetic separation and dynamic impedance measurement

    • Food Control
    • Screening of pathogenic bacteria is an essential measure for ensuring food safety. A fast, sensitive and automatic platform for Salmonella determination was presented employing continuous-flow magnetic isolation, enzymatic impedance amplification and smartphone data analysis.

      • Bacterial pathogens
      • Salmonella
  14. Developmentally related and drought-induced shifts in the kale metabolome limited Salmonella enterica association, providing novel insights to enhance food safety

    • Food Microbiology
    • Plants influence epiphytic bacterial associations but Salmonella enterica colonizes crop plants commensally, raising the possibility of human foodborne illness, but the factors that mediate human pathogen-plant associations remain understudied. We evaluated whether any changes in leaf tissue and surface metabolomes with kale (Brassica oleracea Acephala group) development and in response to drought modulated Salmonella leaf association.

      • Bacterial pathogens
      • Salmonella
  15. Carvacrol encapsulation into nanoparticles produced from chia and flaxseed mucilage: Characterization, stability and antimicrobial activity against Salmonella and Listeria monocytogenes

    • Food Microbiology
    • Carvacrol is a natural antimicrobial with excellent antimicrobial properties against several foodborne pathogens. Encapsulation can increase carvacrol stability and solubility, and mask its pronounced odor. Mucilages have been studied as wall material for nanoparticles due to their high retention capacity of bioactive compounds and ease of chemical modifications to improve their stability.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Salmonella
  16. Risk Factors for Persistent Infection of Non-Typhoidal Salmonella in Poultry Farms, North Central Nigeria

    • Antibiotics
    • Salmonellosis is a bacterial zoonosis causing an array of health conditions. Non-typhoidal salmonellosis (NTS) has a discrete adaptation to certain animals; in poultry, pullorum and fowl typhoid are its primary disease manifestations. The diseases are prevalent in Nigerian poultry and have been well-studied in Nigeria, but less so in North Central Nigeria (NCN).

      • Bacterial pathogens
      • Salmonella
  17. Multiple fluorescent saltatory rolling circle amplification (SRCA) for simultaneous and sensitive detection of Salmonella spp. and Shigella spp. in food

    • LWT
    • Salmonella spp. and Shigella spp. are known as the leading causes of food poisoning worldwide. In this study, we developed a new multiple fluorescent saltatory rolling circle amplification (MF-SRCA) assay for simultaneous and sensitive detection of Salmonella spp. and Shigella spp. in food based on the generation of real-time fluorescence curves that distinguish the positive from the negative samples.

      • Bacterial pathogens
      • Salmonella
      • Shigella
  18. Fit to dwell in many places – The growing diversity of intracellular Salmonella niches

    • Frontiers in Cellular and Infection Microbiology
    • Salmonella enterica is capable of invading different host cell types including epithelial cells and M cells during local infection, and immune cells and fibroblasts during the subsequent systemic spread. The intracellular lifestyles of Salmonella inside different cell types are remarkable for their distinct residential niches, and their varying replication rates. To study this, researchers have employed different cell models, such as various epithelial cells, immune cells, and fibroblasts.

      • Bacterial pathogens
      • Salmonella
  19. Interplay between Rho, H-NS, spurious transcription, and Salmonella gene regulation

    • Proceedings of the National Academy of Sciences
    • Proceedings of the National Academy of Sciences, Volume 119, Issue 33, August 2022. The type III secretion system (T3SS) encoded in the Salmonella pathogenicity island 1 (SPI-1) is a primary virulence factor for Salmonella, required for initiating the inflammatory diarrhea that is the hallmark of salmonellosis and for invading the intestinal epithelium, leading to potentially lethal systemic infection.

      • Bacterial pathogens
      • Salmonella
  20. Effect of sub-minimum inhibitory concentration of ceftriaxone on the expression of outer membrane proteins in Salmonella enterica serovar Typhi

    • World Journal of Microbiology and Biotechnology
    • Multi-drug resistance (MDR) in Salmonella is one of the major reasons for foodborne outbreaks worldwide. Decreased susceptibility of Salmonella Typhi to first-line drugs such as ceftriaxone, ciprofloxacin, and azithromycin has raised concern.

      • Bacterial pathogens
      • Salmonella
  21. Assembly of ordered DNA-curli fibril complexes during Salmonella biofilm formation correlates with strengths of the type I interferon and autoimmune responses

    • PLOS Pathogens
    • by Lauren K. Nicastro, Jaime de Anda, Neha Jain, Kaitlyn C. M. Grando, Amanda L. Miller, Shingo Bessho, Stefania Gallucci, Gerard C. L. Wong, Çagla Tükel Deposition of human amyloids is associated with complex human diseases such as Alzheimer’s and Parkinson’s. Amyloid proteins are also produced by bacteria.

      • Bacterial pathogens
      • Salmonella
  22. Salmonella enterica Serovar Dublin from Cattle in California from 1993–2019: Antimicrobial Resistance Trends of Clinical Relevance

    • Antibiotics
    • Salmonella enterica subsp. enterica serovar Dublin (S.Dublin) is a cattle-adapted pathogen that has emerged as one of the most commonly isolated and multidrug resistant (MDR) serovars in cattle. S.Dublin may be shed in feces, milk, and colostrum and persist in asymptomatic cattle, leading to spread and outbreaks in herds. Though infections with S.Dublin in humans are rare, they are frequently severe, with extraintestinal spread that requires hospitalization and antimicrobial therapy.

      • Bacterial pathogens
      • Salmonella
  23. Salmonella Typhimurium outer membrane protein A (OmpA) renders protection from nitrosative stress of macrophages by maintaining the stability of bacterial outer membrane

    • PLOS Pathogens
    • by Atish Roy Chowdhury, Shivjee Sah, Umesh Varshney, Dipshikha Chakravortty Bacterial porins are highly conserved outer membrane proteins used in the selective transport of charged molecules across the membrane. In addition to their significant contributions to the pathogenesis of Gram-negative bacteria, their role(s) in salmonellosis remains elusive.

      • Bacterial pathogens
      • Salmonella
  24. Complete genome sequencing of a Tequintavirus bacteriophage with a broad host range against Salmonella Abortus equi isolates from donkeys

    • Frontiers in Microbiology
    • Salmonella enterica subspecies enterica serovar abortus equi (S. Abortus equi) is the most common cause of abortion in mares. It has recently been found to cause abortion in donkeys more frequently in China. A novel virulent bacteriophage vB_SabS_Sds2 (hereafter designated as Sds2) was isolated from the feces of donkeys using a S. Abortus equi strain as a host.

      • Bacterial pathogens
      • Salmonella
  25. Expansion of the Plaquing Host Range and Improvement of the Absorption Rate of a T5-like Salmonella Phage by Altering the Long Tail Fibers

    • Applied and Environmental Microbiology
    • Applied and Environmental Microbiology, Ahead of Print. The high host specificity of phages is a real challenge in the therapy applications of the individual phages. This study aimed to edit the long tail fiber proteins (pb1) of a T5-like phage to obtain the engineered phages with expanded plaquing host range.

      • Bacterial pathogens
      • Salmonella