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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 801 - 825 of 4090

  1. Genomic characterization of multidrug-resistant Salmonella Heidelberg E2 strain isolated from chicken carcass in southern Brazil

    • International Journal of Food Microbiology
    • Salmonella Heidelberg is a clinically-important serovar linked to food-borne illness, and commonly isolated from poultry products. Since 1962, Salmonella Heidelberg has been widely reported from poultry production systems in several countries, including Brazil. The emergence of multidrug-resistant (MDR) Salmonella Heidelberg strains in food animals underscores a significant food safety hazard.

      • Bacterial pathogens
      • Salmonella
  2. Effects of Clostridium butyricum on intestinal environment and gut microbiome under Salmonella infection

    • Poultry Science
    • Salmonellosis causes massive economic losses globally every year. Especially in poultry, numerous drug-resistant bacteria have emerged; thus, it is imperative to find alternatives to antibiotics. As a probiotic, Clostridium butyricum (C. butyricum) provides the latest strategy for inhibiting the proliferation of Salmonella. This study aimed to evaluate the effects of C.

      • Bacterial pathogens
      • Salmonella
  3. Salmonella contamination and hazard analysis in a storage facility for feed materials in Japan

    • Journal of Applied Microbiology
    • Journal of Applied Microbiology, Accepted Article. Aims To reduce Salmonella contamination of animal feeds, Salmonella contamination in a feed materials storage facility was investigated, and hazard analysis was performed to acquire the basic information necessary to establish a control method for Salmonella.

      • Bacterial pathogens
      • Salmonella
  4. Complete Genome Sequence of a Salmonella enterica subsp. enterica Serovar Tennessee Strain from Tahini

    • Microbiology Resource Announcements
    • Microbiology Resource Announcements, Ahead of Print. Salmonella sp. infections are associated with contaminated low-moisture foods (with high fat content) with increasing frequency. Here, we report the complete genome sequence of Salmonella enterica subsp. enterica serovar Tennessee, which was isolated from tahini (a paste made from ground sesame seeds) purchased at a local retailer in Berlin, Germany.

      • Bacterial pathogens
      • Salmonella
  5. Vacuum packaging improved inactivation efficacy of moderate dry heat for decontamination of Salmonella on almond kernels

    • International Journal of Food Microbiology
    • The goal of this study was to develop dry heat processing conditions that could achieve a >5-log reduction of Salmonella with minimal negative impact on almond quality. The effects of almond's water activity levels and packaging methods on Salmonella inactivation by dry heat were determined. Almonds were dip-inoculated in a four-strain Salmonella cocktail and conditioned to water activity levels of 0.43, 0.33, 0.23, and 0.20.

      • Bacterial pathogens
      • Salmonella
  6. Peroxyacetic Acid Effectiveness against Salmonella on Raw Poultry Parts is not Affected by Organic Matter

    • Organic matter (OM) accumulation is common in chill tanks used to decontaminate raw poultry parts during processing. Organic matter negatively affects the antimicrobial activity of chlorine-based compounds, but its effect on the antimicrobial effectiveness of peroxyacetic acid (PAA) on poultry meat has not been described.

      • Bacterial pathogens
      • Salmonella
  7. Enterobacter aerogenes B199A may be an effective surrogate for quantifying transfer of Salmonella Newport 96E01152C-TX from cucumber peel to edible flesh and peeler during peeling

    • Fresh cucumbers have been linked to multistate outbreaks of salmonellosis in the United States. Cutting, slicing, shredding, or peeling can transfer pathogens from the surface of fresh produce to edible flesh portion through tools or hands. Various nonpathogenic surrogates have been used in various intervention studies to predict Salmonella behavior.

      • Bacterial pathogens
      • Salmonella
  8. Thermal inactivation of Salmonella enterica and nonpathogenic bacterial surrogates in wheat flour by baking in a household oven

    • Wheat flour has been implicated in recalls and outbreaks linked to Salmonella and pathogenic Escherichia coli. An instructional online video posted on a popular YouTube channel with over 20 million subscribers claimed that safe raw cookie dough could be made from flour baked in a household oven at 177°C (350°F) for 5 min but no evidence in support of that claim was provided.

      • Bacterial pathogens
      • Salmonella
  9. Elucidating Mechanisms of Tolerance to Salmonella Typhimurium across Long-Term Infections Using the Collaborative Cross

    • mBio
    • mBio, Ahead of Print. Understanding the molecular mechanisms underlying resistance and tolerance to pathogen infection may present the opportunity to develop novel interventions. Resistance is the absence of clinical disease with a low pathogen burden, while tolerance is minimal clinical disease with a high pathogen burden. Salmonella is a worldwide health concern.

      • Bacterial pathogens
      • Salmonella
  10. Whole genome sequencing reveals antimicrobial resistance determinants (AMR genes) of Salmonella enterica recovered from raw‐chicken and ready‐to‐eat leaves imported into England between 2014 and 2019

    • Journal of Applied Microbiology
    • Journal of Applied Microbiology, Accepted Article. Aims To compare the antimicrobial resistance (AMR) genes in a genetically diverse group of Salmonella enterica recovered from foods imported into England between 2014 and 2018. Methods and Results Whole genome sequence was used to detect AMR resistance genes or chromosomal mutations associated with AMR in Salmonella recovered from edible leaves imported from Asia (n =115) as compared t

      • Bacterial pathogens
      • Salmonella
  11. Mycoplasma bovis inhibits autophagy in bovine mammary epithelial cells via a PTEN/PI3K-Akt-mTOR-dependent pathway

    • Frontiers in Microbiology
    • Although autophagy can eliminate some intracellular pathogens, others, e.g., Staphylococcus aureus, Salmonella, Mycoplasma bovis, can evade it. The phosphoinositide 3-kinase (PI3K)/protein kinase B (Akt)/mammalian target of rapamycin (mTOR) pathway, a key regulator of autophagy, is involved in initiation and promotion of a range of pathological diseases. As the effects of M. bovis on the autophagic pathway are not well documented, our objective was to elucidate the effects of M.

      • Bacterial pathogens
      • Salmonella
      • Staphylococcus aureus
  12. Enterobacterial LPS-inducible LINC00152 is regulated by histone lactylation and promotes cancer cells invasion and migration

    • Frontiers in Cellular and Infection Microbiology
    • Gut microbes participate in pathogenesis by interacting with the host genome through epigenetic mechanisms, such as long non-coding RNAs. However, the mechanisms by which the microbiota induce expression alteration of long non-coding RNAs remains unclear. Here, we quantified the transcriptome alteration of human colon cell lines after being infected by a common enteric pathogen Salmonella typhimurium SL1344. We observed a widespread lncRNAs expression alteration.

      • Bacterial pathogens
      • Salmonella
  13. Global Spread of MCR-Producing Salmonella enterica Isolates

    • Antibiotics
    • Colistin resistance in bacteria has become a significant threat to food safety and public health, and its development was mainly attributed to the plasmid-mediated mcr genes. This study aimed to determine the global prevalence and molecular characteristics of mcr-producing Salmonella enterica isolates.

      • Bacterial pathogens
      • Salmonella
  14. Curcumin and carvacrol mediated photodynamic inactivation with 405 nm light emitting diodes (LEDs) on Salmonella Enteritidis

    • Food Science and Technology International
    • Photodynamic inactivation (PDI) has a potential application for food preservation that can minimize food pathogens posing risks to consumer health. This study aimed to evaluate the antibacterial activity of 405 nm light-emitting diodes (LEDs) illumination in the presence of carvacrol and curcumin against Salmonella Enteritidis and S. Enteritidis PT4 at different temperatures (4 °C, 25 °C and 37 °C) and time parameters (15 min, 30 min and 45 min) in the illumination system.

      • Bacterial pathogens
      • Salmonella
  15. The role of Salmonella Newport cell surface structures on bacterial attachment and transfer during cucumber peeling

    • Letters in Applied Microbiology
    • Letters in Applied Microbiology, Accepted Article. Fresh cucumbers have been recognized as a vehicle in foodborne disease outbreaks since several multistate outbreaks of salmonellosis linked to fresh cucumbers occurred in the United States. Little is known about how microbial cell surface characteristics that are known to affect adhesion can influence bacterial cross-contamination and transfer. This study investigated the role of S.

      • Bacterial pathogens
      • Salmonella
  16. Improving the sensitivity of lateral flow immunoassay for Salmonella typhimurium detection via flow-rate regulation

    • Food Chemistry
    • Application of the traditional immunochromatographic assay (ICGA) has been limited by its poor sensitivity. The objective of this study was to increase the sensitivity of the traditional ICGA.

      • Bacterial pathogens
      • Salmonella
  17. Prophage Diversity Across Salmonella and Verotoxin-Producing Escherichia coli in Agricultural Niches of British Columbia, Canada

    • Frontiers in Microbiology
    • Prophages have long been regarded as an important contributor to the evolution of Salmonella and Verotoxin-producing E. coli (VTEC), members of the Enterobacteriaceae that cause millions of cases of foodborne illness in North America. In S. Typhimurium, prophages provide many of the genes required for invasion; similarly, in VTEC, the Verotoxin-encoding genes are located in cryptic prophages.

      • Bacterial pathogens
      • Salmonella
  18. Microbiological Contaminants in Drinking Water: Current Status and Challenges

    • Water, Air, & Soil Pollution
    • Water is a vital resource to every living thing on the earth. Once the water is contaminated (physically, chemically, biologically, or radiologically), it brought negative impacts to the living thing. This paper provides a brief review of the characterization of biological pollutants in drinking water and their effects on human health.

      • Bacterial pathogens
      • Salmonella
      • Vibrio
      • Parasites
      • Cyclospora cayetanensis
      • Giardia lamblia
      • Viruses
      • Hepatitis
  19. Dynamics of Antimicrobial Resistance and Genomic Epidemiology of Multidrug-Resistant Salmonella enterica Serovar Indiana ST17 from 2006 to 2017 in China

    • mSystems
    • mSystems, Ahead of Print. The genetic features of foodborne Salmonella have changed in recent years as multidrug-resistant (MDR) strains have become prevalent among various serovars.

      • Bacterial pathogens
      • Salmonella
  20. Switchgrass extractives to mitigate Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium contamination of romaine lettuce at pre‐ and postharvest

    • Journal of Food Science
    • Journal of Food Science, EarlyView. The antimicrobial potential of switchgrass extractives (SE) was evaluated on cut lettuce leaves and romaine lettuce in planta, using rifampicin-resistant Escherichia coli O157:H7 and Salmonella Typhimurium strain LT2 as model pathogens. Cut lettuce leaves were swabbed with E. coli O157:H7 or S.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
      • Escherichia coli O157:H7
      • Salmonella
  21. Antibiotic Resistance of Bacterial Isolates from Smallholder Poultry Droppings in the Guinea Savanna Zone of Nigeria

    • Antibiotics
    • There is a growing risk of antibiotic resistance (AR) in smallholder poultry (SP). This study, therefore, aimed to investigate AR pattern of bacterial isolates from SP in the Guinea Savanna agro-ecological zone of Nigeria. A total of 120 fresh poultry droppings were aseptically collected, randomly, from two tropically adapted (FUNAAB Alpha and Noiler) and local chickens. The chickens were raised either using ethnoveterinary medicines (n = 60) or antibiotics (n = 60).

      • Bacterial pathogens
      • Salmonella
  22. A multi‐jurisdictional outbreak of Salmonella Typhimurium infections linked to backyard poultry—Australia, 2020

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Zoonotic salmonellosis can occur either through direct contact with an infected animal or through indirect contact, such as exposure to an infected animal's contaminated environment. Between May and August 2020, a multi-jurisdictional outbreak of Salmonella Typhimurium (STm) infection due to zoonotic transmission was investigated in Australia. In total, 38 outbreak cases of STm with a median age of 5 years were reported.

      • Bacterial pathogens
      • Salmonella
  23. Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes

    • Frontiers in Microbiology
    • Gene regulation is a key process for all microorganisms, as it allows them to adapt to different environmental stimuli. However, despite the relevance of gene expression control, for only a handful of organisms is there related information about genome regulation. In this work, we inferred the gene regulatory networks (GRNs) of bacterial and archaeal genomes by comparisons with six organisms with well-known regulatory interactions.

      • Bacterial pathogens
      • Salmonella
      • Staphylococcus aureus
  24. Genetic and Structural Variation in the O-Antigen of Salmonella enterica Serovar Typhimurium Isolates Causing Bloodstream Infections in the Democratic Republic of the Congo

    • mBio
    • mBio, Ahead of Print. Salmonella enterica serovar Typhimurium causes a devastating burden of invasive disease in sub-Saharan Africa with high levels of antimicrobial resistance. No licensed vaccine is available, but O-antigen-based candidates are in development, as the O-antigen moiety of lipopolysaccharides is the principal target of protective immunity.

      • Bacterial pathogens
      • Salmonella
  25. Molecular Characterization and Diversity of Bacteria Isolated from Fish and Fish Products Retailed in Kenyan Markets

    • International Journal of Food Science
    • Fish products are highly vulnerable to microbial contamination due to their soft tissues, making them perishable and harmful to consumers. The clinical and subclinical infections reported by fish consumers are mainly associated with pathogenic microorganisms in fish products. Therefore, this study aimed at establishing the molecular profiles and diversity of the bacterial isolates from fish and fish products obtained from Kirinyaga County markets in Kenya.

      • Bacterial pathogens
      • Salmonella