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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 901 - 925 of 4090

  1. Bacterial contamination of chicken meat in slaughterhouses and the associated risk factors: A nationwide study in Thailand

    • PLOS ONE
    • by Kunnanut Klaharn, Duangporn Pichpol, Tongkorn Meeyam, Thanida Harintharanon, Patpong Lohaanukul, Veerasak Punyapornwithaya Slaughterhouses are a key source of bacterial contamination in poultry meat and products, which is a major health and economic concern for several public authorities. This study aimed to quantify the non-compliance of bacterial contamination on chicken meat sampled from slaughterhouses and identify risk factors associated with the contamination.

      • Bacterial pathogens
      • Salmonella
      • Staphylococcus aureus
  2. Resistance Genes, Plasmids, Multilocus Sequence Typing (MLST), and Phenotypic Resistance of Non-Typhoidal Salmonella (NTS) Isolated from Slaughtered Chickens in Burkina Faso

    • Antibiotics
    • The emergence of antimicrobial-resistant bacteria in developing countries increases risks to the health of both such countries’ residents and the global community due to international travel. It is consequently necessary to investigate antimicrobial-resistant pathogens in countries such as Burkina Faso, where surveillance data are not available.

      • Bacterial pathogens
      • Salmonella
  3. Genomic Analysis of Two MDR Isolates of Salmonella enterica Serovar Infantis from a Spanish Hospital Bearing the blaCTX-M-65 Gene with or without fosA3 in pESI-like Plasmids

    • Antibiotics
    • Salmonella enterica serovar Infantis (S. Infantis) is a broiler-associated pathogen which ranks in the fourth position as a cause of human salmonellosis in the European Union. Here, we report a comparative genomic analysis of two clinical S. Infantis isolates recovered in Spain from children who just returned from Peru. The isolates were selected on the basis of resistance to cefotaxime, one of the antibiotics of choice for treatment of S. enterica infections.

      • Bacterial pathogens
      • Salmonella
  4. Salmonella Enteritidis Outbreaks Associated with Egg-Producing Farms Not Regulated by Food and Drug Administration's Egg Safety Rule

    • Foodborne Pathogens and Disease
    • The Food and Drug Administration Egg Safety Rule requires producers with >3000 layer hens to register a Salmonella enterica serotype Enteritidis (SE) prevention plan for production, storage, and transport of shell eggs. Since its implementation began in 2010, four outbreaks of egg-associated salmonellosis have occurred in Tennessee. We reviewed state health department records from each outbreak and described them in the context of the Egg Safety Rule.

      • Bacterial pathogens
      • Salmonella
  5. Modeling the growth of Salmonella on sliced cucumbers as a function of temperature and relative humidity

    • Recent multistate outbreaks of salmonellosis linked to fresh cucumbers underscore the importance of understanding Salmonella behavior on cucumbers under different storage conditions. No validated models which describe the impact of environmental factors on growth of Salmonella on sliced cucumbers currently exist. This study developed mathematical models to predict the growth of Salmonella on sliced cucumbers at different temperature and relative humidity (RH) conditions.

      • Bacterial pathogens
      • Salmonella
  6. Identification of Two Sel1-like Proteins in SPI-19 of Salmonella enterica Serovar Pullorum That Can Mediate Bacterial Infection Through T3SS

    • Microbiological Research
    • The type VI secretion system (T6SS) encoded by Salmonella Pathogenicity Island 19 (SPI-19) has been confirmed to be involved in bacterial infection or colonization in hosts and in the inhibition of the host T-cell immune response. However, the deletion of the core genes (clpVvgrG, and hcp2) encoding the T6SS apparatus does not affect the phenotypes caused by SPI-19-encoded T6SS.

      • Bacterial pathogens
      • Salmonella
  7. Integration of the Salmonella Typhimurium Methylome and Transcriptome Reveals That DNA Methylation and Transcriptional Regulation Are Largely Decoupled under Virulence-Related Conditions

    • mBio
    • mBio, Ahead of Print. Despite being in a golden age of bacterial epigenomics, little work has systematically examined the plasticity and functional impacts of the bacterial DNA methylome.

      • Bacterial pathogens
      • Salmonella
  8. Salmonella Central Carbon Metabolism Enhances Bactericidal Killing by Fluoroquinolone Antibiotics

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. The efficacy of killing by bactericidal antibiotics has been reported to depend in large part on the ATP levels, with low levels of ATP leading to increased persistence after antibiotic challenge.

      • Bacterial pathogens
      • Salmonella
  9. Prevalence and whole-genome sequencing analysis of Salmonella reveal its spread along the duck production chain

    • Poultry Science
    • Salmonella is the most important foodborne pathogen in poultry production systems and can infect humans via consumption of contaminated food. Ducks, an important waterfowl widely raised in China, are also a vehicle that transmits Salmonella through the food supply chain.

      • Bacterial pathogens
      • Salmonella
  10. Gene essentiality profiling reveals a novel determinant of stresses preventing protein aggregation in Salmonella

    • Emerging Microbes & Infections
    • Adaptation to various stresses during infection is important for Salmonella Typhimurium virulence, while the fitness determinants under infection-relevant stress conditions remain unknown. Here, we simulated conditions Salmonella encountered within the host or in the environment by 15 individual stresses as well as two model cell lines (epithelium and macrophage) to decipher the genes and pathways required for fitness.

      • Bacterial pathogens
      • Salmonella
  11. Cross-Talk Between the Intestinal Epithelium and Salmonella Typhimurium

    • Frontiers in Microbiology
    • Salmonella enterica serovars are invasive gram-negative bacteria, causing a wide range of diseases from gastroenteritis to typhoid fever, representing a public health threat around the world. Salmonella gains access to the intestinal lumen after oral ingestion of contaminated food or water. The crucial initial step to establish infection is the interaction with the intestinal epithelium. Human-adapted serovars such as S. Typhi or S.

      • Bacterial pathogens
      • Salmonella
  12. Identification of Crucial Amino Acid Residues for Antimicrobial Activity of Angiogenin 4 and Its Modulation of Gut Microbiota in Mice

    • Frontiers in Microbiology
    • Angiogenin 4 bearing ribonuclease activity is an endogenous antimicrobial protein expressed in small and large intestine. However, the crucial amino acid residues responsible for the antibacterial activity of Ang4 and its impact on gut microbiota remain unknown. Here, we report the contribution of critical amino acid residues in the functional regions of Ang4 to its activity against Salmonella typhimurium LT2 and the effect of Ang4 on gut microbiota in mice. We found that Ang4 binds S.

      • Bacterial pathogens
      • Salmonella
  13. Cold plasma-activated hydrogen peroxide aerosols inactivate Salmonella Typhimurium and Listeria innocua on smooth surfaces and stem scars of tomatoes: Modeling effects of hydrogen peroxide concentration, treatment time and dwell time

    • Food Control
    • This study was conducted to evaluate the effects of hydrogen peroxide (H2O2) concentration, treatment time, and dwell time on the efficacy of cold plasma-activated hydrogen peroxide aerosols against bacteria on stem scar and smooth surfaces of tomatoes.

      • Bacterial pathogens
      • Salmonella
  14. Multiplex PCR assay based on the citE2 gene and intergenic sequence for the rapid detection of Salmonella Pullorum in chickens

    • Poultry Science
    • Salmonella is one of the most common Gram-negative pathogens and seriously threatens chicken farms and food safety. This study aimed to establish a multiplex polymerase chain reaction (PCR) approach for the identification of different Salmonella enterica subsp. enterica. The citE2 gene and interval sequence of SPS4_00301–SPS4_00311 existed in all S.

      • Bacterial pathogens
      • Salmonella
  15. Research Note: Effect of corn silage and alfalfa meal as alternative induced molt methods to improving Salmonella Enteritidis resistance in laying hens

    • Poultry Science
    • This experiment was conducted to evaluate diets containing a high level of corn silage and alfalfa meal in inducing molt and reducing susceptibility to Salmonella Enteritidis (SE) colonization in laying hens.

      • Bacterial pathogens
      • Salmonella
  16. Metagenomic analysis of wastewater phageome from a University Hospital in Turkey

    • Archives of Microbiology
    • Phage DNA analysis gives opportunity to understand living ecosystem of the environment where the samples are taken. In the present study, we analyzed phage DNA obtained from wastewater sample of university hospital sewage. After filtration, long high-speed centrifugation was done to collect phages. DNA was extracted from pellet by phenol chloroform extraction and used for NGS sequencing.

      • Bacterial pathogens
      • Salmonella
      • Staphylococcus aureus
  17. Effects of High Pressure-Assisted Extraction on Yield, Antioxidant, Antimicrobial, and Anti-diabetic Properties of Chlorogenic Acid and Caffeine Extracted from Green Coffee Beans

    • Food and Bioprocess Technology
    • The bioactive ingredients of green coffee beans were extracted using high pressure-assisted extraction (HPE) and compared against those derived from the traditional heat reflux (HR) extraction method.

      • Bacterial pathogens
      • Salmonella
      • Staphylococcus aureus
  18. The Number and Type of Chaperone-Usher Fimbriae Reflect Phylogenetic Clade Rather than Host Range in Salmonella

    • mSystems
    • mSystems, Ahead of Print. Salmonella is one of the most successful foodborne pathogens worldwide, owing in part to its ability to colonize or infect a wide range of hosts. Salmonella serovars are known to encode a variety of different fimbriae (hairlike organelles that facilitate binding to surfaces); however, the distribution, number, and sequence diversity of fimbriae encoded across different lineages of Salmonella were unknown.

      • Bacterial pathogens
      • Salmonella
  19. Genome Sequence of Salmonella enterica Serovar Typhimurium Phage SAP12

    • Microbiology Resource Announcements
    • Microbiology Resource Announcements, Ahead of Print. Here, we report the genome of phage SAP012, which was isolated against Salmonella enterica serovar Typhimurium.

      • Bacterial pathogens
      • Salmonella
  20. Fourteen mcr-1-Positive Salmonella enterica Isolates Recovered from Travelers Returning to the United States from the Dominican Republic

    • Microbiology Resource Announcements
    • Microbiology Resource Announcements, Volume 11, Issue 5, May 2022. In the United States, reports of Salmonella enterica carrying mcr-1 remain rare in humans, but when observed, the infection is often associated with travel. Here, we report 14 mcr-1-positive Salmonella enterica isolates from patients in the United States that reported travel to the Dominican Republic within the 12 months before illness.

      • Bacterial pathogens
      • Salmonella
  21. A Dual Regulatory Role of the PhoU Protein in Salmonella Typhimurium

    • mBio
    • mBio, Ahead of Print. Bacteria utilize two-component regulatory systems to sense and respond to their surroundings. Unlike other two-component systems that directly sense through a sensory domain in the histidine kinase (HK), the PhoB/PhoR two-component system requires additional proteins, including the PstSCAB phosphate transporter and the PhoU protein, to sense phosphate levels.

      • Bacterial pathogens
      • Salmonella
  22. Salmonella Induces the cGAS-STING-Dependent Type I Interferon Response in Murine Macrophages by Triggering mtDNA Release

    • mBio
    • mBio, Ahead of Print. Salmonella enterica serovar Typhimurium (S. Typhimurium) elicited strong innate immune responses in macrophages. To activate innate immunity, pattern recognition receptors (PRRs) in host cells can recognize highly conserved pathogen-associated molecular patterns (PAMPs). Here, we showed that S. Typhimurium induced a robust type I interferon (IFN) response in murine macrophages.

      • Bacterial pathogens
      • Salmonella
  23. Salmonella Facilitates Iron Acquisition through UMPylation of Ferric Uptake Regulator

    • mBio
    • mBio, Ahead of Print. Iron limitation is a universal strategy of host immunity during bacterial infection. However, the mechanisms by which pathogens antagonize host nutritional immunity have not been fully elucidated. Here, we identified a requirement for the UMPylator YdiU for this process in Salmonella. The expression of YdiU was dramatically induced by the metal starvation signal.

      • Bacterial pathogens
      • Salmonella
  24. Involvement of the DNA Phosphorothioation System in TorR Binding and Anaerobic TMAO Respiration in Salmonella enterica

    • mBio
    • mBio, Ahead of Print. Although the phosphorothioate (PT) modification, in which the nonbridging oxygen in the DNA sugar-phosphate backbone is replaced by sulfur, has been reported to play versatile roles in multiple cellular processes, very little data have been obtained to define the role of PT in epigenetic regulation.

      • Bacterial pathogens
      • Salmonella
  25. Linking the Salmonella enterica 1,2-Propanediol Utilization Bacterial Microcompartment Shell to the Enzymatic Core via the Shell Protein PduB

    • Journal of Bacteriology
    • Journal of Bacteriology, Ahead of Print. Bacterial microcompartments (MCPs) are protein-based organelles that house the enzymatic machinery for metabolism of niche carbon sources, allowing enteric pathogens to outcompete native microbiota during host colonization. While much progress has been made toward understanding MCP biogenesis, questions still remain regarding the mechanism by which core MCP enzymes are enveloped within the MCP protein shell.

      • Bacterial pathogens
      • Salmonella