An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 176 - 200 of 4014

  1. Growth assessment of Salmonella enterica multi-serovar populations in poultry rinsates with commonly used enrichment and plating media

    • Food Microbiology
    • Isolation of Salmonella from enrichment cultures of food or environmental samples is a complicated process. Numerous factors including fitness in various selective enrichment media, relative starting concentrations in pre-enrichment, and competition among multi-serovar populations and associated natural microflora, come together to determine which serovars are identified from a given sample.

      • Bacterial pathogens
      • Salmonella
  2. Advances in transcriptomic analysis of Salmonella biofilms and their correlation with food safety

    • Current Opinion in Food Science
    • Salmonella, a gram-negative Enterobacteriaceae bacterium, is a common foodborne pathogen that causes diarrhea. Biofilms produced by Salmonella adhere to food and utensil surfaces, making it challenging to disrupt toxin production. Preventing biofilm formation and eliminating established biofilms are crucial for ensuring food safety.

      • Bacterial pathogens
      • Salmonella
  3. Antibacterial, antioxidant activities of lactic acid bacteria-bioconversioned almond extract

    • Food Science and Biotechnology
    • This study was about bioconversion of almonds by lactic acid bacteria. There are two bacteria used for bioconversion of almond extract: Lactiplantibacillus plantarum ATCC14917 and Lacticaseibacillus rhamnosus GG KCTC5033. Almond extract (AE) was inoculated with L. plantarum or L. rhamnosus GG for 3 days. AE inoculated with L. plantarum (LP-AE) and AE inoculated with L.

      • Bacterial pathogens
      • Salmonella
      • Yersinia
  4. Quantitative Risk Assessment of Salmonella in Breaded Pork Products in China

    • Foodborne Pathogens and Disease
    • Pork products were the most common media of Salmonella in China, breaded pork products as a very popular meat presently, whose Salmonella risk should be drawn to attention.

      • Bacterial pathogens
      • Salmonella
  5. Ecological incidence, genetic diversity, multidrug resistance of Salmonella enteritidis recovered from broiler and layer chicken farms

    • Poultry Science
    • Salmonella is a significant foodborne pathogen that has a significant impact on public health, and different strains of multidrug resistance (MDR) have been identified in this genus. This study used a combination of phenotypic and genotypic approaches to identify distinct Salmonella species collected from poultry broiler and layer farms, and antibiotic sensitivity testing was performed on these species.

      • Bacterial pathogens
      • Salmonella
  6. Oral Phages Prophylaxis against Mixed Escherichia coli O157:H7 and Salmonella Typhimurium Infections in Weaned Piglets

    • Veterinary Microbiology
    • Escherichia coli and Salmonella Typhimurium are the main pathogens of diarrhea in weaned piglets. The prevention of bacterial diarrhea in weaned piglets by phage is rarely reported. We conducted this study to evaluate the preventive effect of phages on mixed Escherichia coli and Salmonella Typhimurium infections in weaned piglets.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
      • Salmonella
  7. Acidic water tempering and heat treatment, a hurdle approach to reduce wheat Salmonella load during tempering and its effects on flour quality

    • Food Research International
    • The cultivation and processing of wheat render it susceptible to microbial contamination from varied sources. Hence, pathogens such as Salmonella can contaminate wheat grains, which poses a food safety risk in wheat-based products. This risk is displayed by the incidence of foodborne illness outbreaks linked to Salmonella-contaminated wheat flour and flour-based products.

      • Bacterial pathogens
      • Salmonella
  8. Serovars, Virulence and Antimicrobial Resistance Genes of Non-Typhoidal Salmonella Strains from Dairy Systems in Mexico

    • Antibiotics
    • Salmonella isolated from dairy farms has a significant effect on animal health and productivity. Different serogroups of Salmonella affect both human and bovine cattle causing illness in both reservoirs. Dairy cows and calves can be silent Salmonella shedders, increasing the possibility of dispensing Salmonella within the farm.

      • Bacterial pathogens
      • Salmonella
  9. Quantification of Salmonella Infantis transfer from transport drawer flooring to broiler chickens during holding

    • Poultry Science
    • Transportation is a potential point of cross-contamination before broiler chickens arrive at the processing plant for slaughter. Previous studies have associated the use of uncleaned transport containers with the introduction of pathogenic bacteria onto uncontaminated broilers. The objective of this study was to quantify the transfer of Salmonella from transport drawer perforated flooring to broiler chickens during different holding times.

      • Bacterial pathogens
      • Salmonella
  10. Influence of peroxyacetic acid concentration, temperature, pH, and treatment time on antimicrobial efficacy against Salmonella on chicken wings

    • Poultry Science
    • Peroxyacetic acid (PAA) is commonly used during poultry processing to reduce the prevalence of Salmonella on carcasses and parts. Wash solutions containing PAA are used at varying concentrations during processing and processors use internally validated practices that best suit the needs of the individual establishment.

      • Bacterial pathogens
      • Salmonella
  11. Protective effects of puerarin on liver tissue in Salmonella-infected chicks: a proteomic analysis

    • Poultry Science
    • Salmonella enterica is a zoonotic bacterium that not only causes serious economic losses to the livestock and poultry industries but also seriously endangers human health.

      • Bacterial pathogens
      • Salmonella
  12. Isolation and characterization of phage ISTP3 for bio-control application against drug-resistant Salmonella

    • Frontiers in Microbiology
    • Salmonella including drug-resistant strains are major foodborne pathogens causing serious illness and pose a great threat to the prevention and control for food safety. Phages can naturally defect the bacterium, is considered as a new and promising biological antimicrobial agent in the post-antibiotic era. A poultry facility in Wuhan, China provided wastewater samples from which a collection of 29 phages were isolated and purified.

      • Bacterial pathogens
      • Salmonella
  13. Whole-Genome Sequencing Analysis of Non-Typhoidal Salmonella Isolated from Breeder Poultry Farm Sources in China, 2020–2021

    • Antibiotics
    • Non-typhoidal salmonellosis is a dangerous foodborne disease that causes enormous economic loss and threatens public health worldwide. The consumption of food, especially poultry or poultry products, contaminated with non-typhoidal Salmonella (NTS) is the main cause of human salmonellosis. To date, no research has identified the molecular epidemiological characteristics of NTS strains isolated from breeder chicken farms in different provinces of China.

      • Bacterial pathogens
      • Salmonella
  14. Transcriptome and proteome profile of jejunum in chickens challenged with Salmonella Typhimurium revealed the effects of dietary bilberry anthocyanin on immune function

    • Frontiers in Microbiology
    • Introduction The present study investigated the effects of bilberry anthocyanin (BA) on immune function when alleviating Salmonella Typhimurium (S. Typhimurium) infection in chickens. Methods A total of 180 newly hatched yellow-feathered male chicks were assigned to three groups (CON, SI, and SI + BA). Birds in CON and SI were fed a basal diet, and those in SI + BA were supplemented with 100 mg/kg BA for 18 days.

      • Bacterial pathogens
      • Salmonella
  15. 103 Development of a Novel, Experimental, Minimally Invasive Model to Investigate the Genesis and Etiology of Liver Abscesses in Cattle

    • Journal of Animal Science
    • Most research surrounding liver abscesses involves post-hoc evaluation of naturally occurring abscesses in production settings. Few studies have been designed to experimentally induce abscesses with the purpose of identifying a time course, causality, and associated physiological implications.

      • Bacterial pathogens
      • Salmonella
  16. 104 Development of an Experimental Model to Induce Liver Abscesses in Steers Using an Acidotic Diet Challenge and Oral Bacterial Inoculation

    • Journal of Animal Science
    • The objective of this study was to develop a model for liver abscesses (LA) in Holstein steers by using an acidotic diet or acidotic diet plus intraruminal inoculation of Fusobacterium necrophorum, Salmonella enterica serotype Lubbock, and Truperella pyogenes.

      • Bacterial pathogens
      • Salmonella
  17. Salmonella enterica serotypes isolated for the first time in laying hens, and their susceptibility to antibiotics

    • Poultry Science
    • In this study, a total of 323 drag swab samples were taken from laying hen fresh feces from 3 different provinces (Kırklareli, Edirne, and Tekirdağ), which are located in the European part of Türkiye. According to the ISO 6579: 2002 method, 17.3% of the samples were found positive for Salmonella.

      • Bacterial pathogens
      • Salmonella
  18. Serotype distribution, antimicrobial resistance, virulence genes, and genetic diversity of Salmonella spp. isolated from the informal leafy green vegetable supply chains in South Africa

    • Journal of Food Protection
    • Salmonella have been implicated in foodborne disease outbreaks globally and is a pressing concern in the South African informal sector due to inadequate hygiene standards and limited regulatory oversight, leading to a higher risk of foodborne diseases.

      • Bacterial pathogens
      • Salmonella
  19. A machine learning approach to identifying Salmonella stress response genes in isolates from poultry processing

    • Food Research International
    • We explored the potential of machine learning to identify significant genes associated with Salmonella stress response during poultry processing using whole genome sequencing (WGS) data. The Salmonella isolates (n = 177) used in this study were obtained from various chicken sources (skin before chiller, chicken carcass before chiller, frozen chicken, and post-chill chicken carcass).

      • Bacterial pathogens
      • Salmonella
  20. In silico exploration of Serratia sp. BRL41 genome for detecting prodigiosin Biosynthetic Gene Cluster (BGC) and in vitro antimicrobial activity assessment of secreted prodigiosin

    • PLOS ONE
    • by Farhana Boby, Md. Nurul Huda Bhuiyan, Barun Kanti Saha, Subarna Sandhani Dey, Anik Kumar Saha, Md Jahidul Islam, Mahci Al Bashera, Shyama Prosad Moulick, Farhana Jahan, Md. Asad Uz Zaman, Sanjana Fatema Chowdhury, Showti Raheel Naser, Md. Salim Khan, Md. Murshed Hasan Sarkar The raising concern of drug resistance, having substantial impacts on public health, has instigated the search of new natural compounds with substantial medicinal activity.

      • Bacterial pathogens
      • Salmonella
      • Staphylococcus aureus
  21. Egg-associated Salmonella enterica serovar Enteritidis: comparative genomics unveils phylogenetic links, virulence potential, and antimicrobial resistance traits

    • Frontiers in Microbiology
    • Salmonella enterica serovar Enteritidis (SE) remains a frequent cause of foodborne illnesses associated with the consumption of contaminated hen eggs. Such a food–pathogen association has been demonstrated epidemiologically, but the molecular basis for this association has not been explored. Comparative genomic analysis was implemented to decipher the phylogenomic characteristics, antimicrobial resistance, and virulence potential of eggs-associated SE.

      • Bacterial pathogens
      • Salmonella
  22. Control of Salmonella in wheat grains with sodium bisulfate (SBS) tempering and its impact on flour quality

    • Cereal Chemistry
    • AbstractBackground and ObjectivesIn the last decade, the incidence of foodborne illness outbreaks and recalls connected with wheat flour and flour‐based goods infected with enteric bacteria such as Salmonella has grown. This study investigated the activity of sodium bisulfate (SBS) as an antibacterial agent against four different serovars of Salmonella enterica.FindingsThe dose‐dependent, anti‐Salmonella concentration of SBS revealed a minimum inhibitory activity (MIC) of 0.32%.

      • Bacterial pathogens
      • Salmonella
  23. Identification of virulence factors and antibiotic resistance in Salmonella enterica subsp. enterica serovar Javiana (FARPER-220) isolated from broiler chickens

    • Microbiology Resource Announcements
    • Microbiology Resource Announcements, Ahead of Print. Genome sequencing of highly virulent Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 (ST-1674) isolated from broiler chickens in Peru revealed multiple virulence factors, antibiotic resistance genes, and invasion-related subcategories. The results provide insights into the potential importance of this strain in causing infections in various animals.

      • Bacterial pathogens
      • Salmonella
  24. 221 Increasing Functional Amino Acid Ratios Does Not Improve Growth Performance in Pigs Raised Under Poor Sanitary Conditions When Fed with Individual Precision Feeding Or Conventional Feeding Systems

    • Journal of Animal Science
    • Immune system activation redirects dietary nutrients to defense mechanisms, thereby impairing growth performance of pigs. Supplementing pigs with functional amino acids (AA) such as Met, Thr and Trp was shown to support the immune system and reduce the negative effects on growth. However, pigs respond differently to immune stressors which increase herd variability.

      • Bacterial pathogens
      • Salmonella
  25. Early Salmonella Typhimurium inoculation may obscure anti-interleukin-10 protective effects on broiler performance during coccidiosis and necrotic enteritis challenge

    • Poultry Science
    • Anti-interleukin (IL)-10 may preserve broiler performance during coccidiosis by diminishing Eimeria spp. host-evasion but has not been evaluated during secondary Clostridium perfringens challenge (necrotic enteritis). Early Salmonella Typhimurium inoculation is implemented in some models to improve repeatability—a potential confounder due to Salmonella using similar IL-10 host evasion pathways.

      • Bacterial pathogens
      • Salmonella