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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 1283

  1. 177 Modulation of fecal microbiome by phytogenics, a postbiotic, and mix of organic acids with essential oils in weaned pigs subjected to F18 Escherichia coli challenge

    • Journal of Animal Science
    • This study evaluated the effects of bioactive feed ingredients on fecal microbiome of weaned pigs subjected to F18 enterotoxigenic Escherichia coli (ETEC) challenge. Two blocks of weaned pigs [n = 72; Yorkshire/Landrace/Duroc; initial body weight (BW) = 6.62 ± 1.37 kg] were balanced by gender and litter and randomly allocated to one of the six treatments with 12 pens/block and 6 pigs/pen.

      • Bacterial pathogens
      • Campylobacter
  2. Comparison of the fecal microbiota of adult healthy dogs fed a plant-based (vegan) or an animal-based diet

    • Frontiers in Microbiology
    • PurposePet guardians are increasingly seeking vegan dog foods. However, research on the impact of these diets on gastrointestinal (GI) physiology and health is limited. In humans, vegan diets modify the GI microbiota, increasing beneficial digestive microorganisms. This study aimed to examine the canine fecal microbiota in response to a vegan diet compared to an animal-based diet.MethodsSixty-one client-owned healthy adult dogs completed a randomized, double-blinded longitudinal study.

      • Bacterial pathogens
      • Campylobacter
  3. Identification of novel small molecule inhibitors of twin arginine translocation (Tat) pathway and their effect on the control of Campylobacter jejuni in chickens

    • Frontiers in Microbiology
    • IntroductionControl of Campylobacter from farm to fork is challenging due to the frequent emergence of antimicrobial-resistant isolates. Furthermore, poultry production systems are known reservoirs of Campylobacter. The twin-arginine translocation (Tat) pathway is a crucial bacterial secretion system that allows Campylobacter to colonize the host intestinal tract by using formate as the main source of energy.

      • Bacterial pathogens
      • Campylobacter
      • Chemical contaminants
      • Antibiotic residues
  4. Virulence Genes, Antimicrobial Resistance, and Genotypes of Campylobacter jejuni Isolated from Chicken Slaughterhouses in South Korea

    • Foodborne Pathogens and Disease
    • Campylobacter jejuni represents one of the leading causes of bacterial gastroenteritis in humans and is primarily linked to chicken meat contamination. In the present study, we analyzed the virulence and survival genes, antimicrobial resistance, and the clonal distribution of 50 C. jejuni isolates obtained from various sources in 14 chicken slaughterhouses across 8 provinces in South Korea from 2019 to 2022.

      • Bacterial pathogens
      • Campylobacter
  5. Protective effect of chicken yolk antibody Y against Campylobacter jejuni induced diarrhea in cats

    • Frontiers in Microbiology
    • Campylobacter jejuni (C. jejuni) is a common pathogen that often causes diarrhea, loss of appetite, and even enteritis in domestic cats, affecting their growth and development, especially in kittens under 6 months of age. Oral passive immunization with chicken yolk antibody Y has been proved effective for the treatment of gastrointestinal pathogen infections due to its high specificity. In this study, C.

      • Bacterial pathogens
      • Campylobacter
  6. Identification of a multidrug resistance genomic island harboring a nonfunctional optrA gene in Campylobacter coli of chicken origin

    • Veterinary Microbiology
    • Campylobacter spp., such as Campylobacter jejuni and Campylobacter coli, are important zoonotic Gram-negative pathogens that cause acute intestinal diseases in humans. In this study, a retrospective analysis was conducted on previously collected Campylobacter isolates from antimicrobial resistance surveillance. A total of 29 optrA-positive C.

      • Bacterial pathogens
      • Campylobacter
  7. Antimicrobial Resistance Profiles of Campylobacter spp. Recovered from Chicken Farms in Two Districts of Bangladesh

    • Foodborne Pathogens and Disease
    • The rapid emergence of antimicrobial resistance (AMR) in Campylobacter has reinforced its status as a foodborne pathogen of significant public health concern. Resistant Campylobacter is typically transferred to humans via the consumption of contaminated animal products, particularly poultry. The genes associated with antimicrobial resistance in Campylobacter spp. are poorly understood.

      • Bacterial pathogens
      • Campylobacter
  8. Implementation of a national monitoring programme of Campylobacter in Irish broilers to measure progress of on‐farm and primary processing control measures

    • Zoonoses and Public Health
    • Abstract Background Campylobacter is the most common food‐borne pathogen in the European Union. In 2018, the crude incidence rate in Ireland was 63.6 per 100,000 population. Chicken is considered an important source of infection for humans. In 2015, the Campylobacter Stakeholders' Group (CSG) was established to reduce Campylobacter contamination levels in Irish broiler flocks.

      • Bacterial pathogens
      • Campylobacter
  9. Complete genome sequence of plasmid-bearing aerotolerant Campylobacter jejuni strain S2-20 isolated from retail chicken meat

    • Microbiology Resource Announcements
    • Microbiology Resource Announcements, Ahead of Print. Complete genome sequencing of aerotolerant Campylobacter jejuni strain S2-20 revealed the presence of a chromosome of 1,695,449 bp and a plasmid of 49,741 bp that contains predicted antimicrobial resistance and type IV secretion system genes. The chromosome harbored several putative oxidative stress genes with potential roles in aerotolerance.

      • Bacterial pathogens
      • Campylobacter
  10. Microbiological Quality and Safety of Fresh Rabbit Meat with Special Reference to Methicillin-Resistant S. aureus (MRSA) and ESBL-Producing E. coli

    • Antibiotics
    • The purpose of this investigation was to evaluate the microbial quality and safety of rabbit meat. A total of 49 rabbit meat samples were taken at the retail level. The mesophiles, staphylococci, Enterobacterales, and Pseudomonas spp. counts were 4.94 ± 1.08, 2.59 ± 0.70, 2.82 ± 0.67, and 3.23 ± 0.76 log CFU/g, respectively. Campylobacter spp.

      • Bacterial pathogens
      • Campylobacter
      • Listeria monocytogenes
      • Staphylococcus aureus
  11. In-vitro selection of lactic acid bacteria to combat Salmonella enterica and Campylobacter jejuni in broiler chickens

    • World Journal of Microbiology and Biotechnology
    • Campylobacter and Salmonella are the two most prominent foodborne zoonotic pathogens reported in the European Union. As poultry is one of the major sources of these pathogens, it is imperative to mitigate the colonization of these pathogens in poultry.

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
  12. Safety and efficacy of a feed additive consisting of narasin (Monteban® G100) for chickens for fattening (Elanco GmbH)

    • EFSA Journal
    • Abstract Following a request from the European Commission, EFSA was asked to deliver a scientific opinion on the safety and efficacy of the coccidiostat narasin (Monteban® G100) for chickens for fattening. In a previous opinion, uncertainties remained on the identification and characterisation of the non‐genetically modified production strain of the active substance narasin.

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
  13. Campylobacter presence on Dutch broiler farms and associated risk factors

    • Poultry Science
    • Campylobacter is the most reported zoonotic pathogen in humans in the European Union. Poultry is a major source of human infection with Campylobacter. Although many studies are done on the presence of Campylobacter in broilers and theoretically effective control measures are known, their relative importance at broiler farms remains poorly understood.

      • Bacterial pathogens
      • Campylobacter
  14. A broad host phage, CP6, for combating multidrug-resistant Campylobacter prevalent in poultry meat

    • Poultry Science
    • Campylobacter is a major cause of bacterial foodborne diarrhea worldwide. Consumption of raw or undercooked chicken meat contaminated with Campylobacter is the most common causative agent of human infections. Given the high prevalence of contamination in poultry meat and the recent rise of multi-drug-resistant (MDRCampylobacter strains, an effective intervention method of reducing bird colonization is needed.

      • Bacterial pathogens
      • Campylobacter
  15. Using peptide nucleic acid fluorescence in situ hybridization (PNA-FISH) to detect Campylobacter spp. in food samples

    • LWT
    • Foodborne diseases have a considerable negative impact on socioeconomic development globally and are an important cause of morbidity and mortality. Among the foodborne bacterial pathogens, Campylobacter spp. is recognized as the leading cause of foodborne illness.

      • Bacterial pathogens
      • Campylobacter
  16. Reduction of Campylobacter on broiler carcasses using slurry ice

    • LWT
    • Reduction of Campylobacter on broiler meat is crucial for decreasing the number of campylobacteriosis cases. A module (IceGun®) that sprays slurry ice on carcasses has been developed to enhance the chilling capacity in poultry slaughterhouses and may, in addition, help reduce the bacterial load. The present study investigated how slurry ice (IceGun®) affects the Campylobacter load on broiler carcasses.

      • Bacterial pathogens
      • Campylobacter
  17. The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2021–2022

    • EFSA Journal
    • Abstract This report by the European Food Safety Authority and the European Centre for Disease prevention and Control, provides an overview of the main findings of the 2021–2022 harmonised Antimicrobial Resistance (AMR) monitoring in Salmonella spp., Campylobacter jejuni and C. coli from humans and food‐producing animals (broilers, laying hens and fattening turkeys, fattening pigs and cattle under one year of age) and relevant meat thereof.

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
      • Staphylococcus aureus
  18. Whole genome sequence-based characterization of Campylobacter isolated from broiler carcasses over a three-year period in a big poultry slaughterhouse reveals high genetic diversity and a recurring genomic lineage of Campylobacter jejuni

    • Infection, Genetics and Evolution
    • Campylobacter is among the most frequent agents of bacterial gastroenteritis in Europe and is primarily linked to the consumption of contaminated food. The aim of this study was to assess genomic diversity and to identify antimicrobial resistance and virulence genes of 155 Campylobacter isolated from broiler carcasses (neck skin samples) in a large-scale Swiss poultry abattoir over a three-year period.

      • Bacterial pathogens
      • Campylobacter
  19. Supplementation of lactobacillus fermented rapeseed meal in broiler diet reduces Campylobacter Jejuni caecal colonisation and limits the L‐tryptophan and L‐histidine biosynthesis pathways

    • Journal of the Science of Food and Agriculture
    • Abstract BACKGROUND Campylobacter jejuni (C. jejuni), a widely distributed global foodborne pathogen primarily linked with contaminated chicken meat, poses a significant health risk. Lowering this pathogen abundance in poultry meat is challenging but essential. This study assessed the impact of lactobacillus‐fermented rapeseed meal (LFRM) on broilers exposed to C. jejuni contaminated litter, evaluating growth performance, Campylobacter levels, and metagenomic profile.

      • Bacterial pathogens
      • Campylobacter
  20. Quantitative assessment of food safety interventions for Campylobacter spp. and Salmonella spp. along the chicken meat supply chain in Burkina Faso and Ethiopia

    • International Journal of Food Microbiology
    • Rural and small-scale chicken farming is a major source of income in most African countries, and chicken meat is an important source of nutrients. However, chicken meat can be contaminated with Campylobacter spp. and Salmonella spp., pathogens with a high reported burden of foodborne illnesses. Therefore, it is essential to control these pathogens in chicken meat.

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
  21. The antibacterial mechanism of (−)‐epigallocatechin‐3‐gallate (EGCG) against Campylobacter jejuni through transcriptome profiling

    • Journal of Food Science
    • Abstract (−)‐Epigallocatechin‐3‐gallate (EGCG) has been shown antibacterial activity against Campylobacter jejuni; however, the relevant antibacterial mechanism is unknown. In this study, phenotypic experiments and RNA sequencing were used to explore the antibacterial mechanism. The minimum inhibitory concentration of EGCG on C. jejuni was 32 µg/mL. EGCG‐treated was able to increase intracellular reactive oxygen species levels and decline bacterial motility.

      • Bacterial pathogens
      • Campylobacter
  22. Comparative Assessment of the Antibacterial and Antibiofilm Actions of Benzalkonium Chloride, Erythromycin, and L(+)-Lactic Acid against Raw Chicken Meat Campylobacter spp. Isolates

    • Antibiotics
    • Campylobacter spp. are significant zoonotic agents, which cause annually millions of human cases of foodborne gastroenteritis worldwide. Their inclusion in biofilms on abiotic surfaces seems to play a pivotal role in their survival outside of the host, growth, and spread.

      • Bacterial pathogens
      • Campylobacter
  23. Detection and Distribution of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) in Campylobacter jejuni Isolates from Chicken Livers

    • Journal of Food Protection
    • Campylobacter jejuni is the leading foodborne bacterial pathogen that causes human gastroenteritis worldwide linked to consumption of undercooked broiler livers. Application of bacteriophages during poultry production has been used as an alternative approach to reduce contamination of poultry meat by Campylobacter. To make this approach effective, understanding the presence of the bacteriophage sequences in the CRISPR spacers in C.

      • Bacterial pathogens
      • Campylobacter
  24. Temporal dynamics of volatile fatty acids profile, methane production, and prokaryotic community in an in vitro rumen fermentation system fed with maize silage

    • Frontiers in Microbiology
    • Anaerobic in vitro fermentation is widely used to simulate rumen kinetics and study the microbiome and metabolite profiling in a controlled lab environment. However, a better understanding of the interplay between the temporal dynamics of fermentation kinetics, metabolic profiles, and microbial composition in in vitro rumen fermentation batch systems is required.

      • Bacterial pathogens
      • Campylobacter
  25. Viable Campylobacter jejuni on eggshells and its potential to cross-contaminate egg white and yolk when using a manual separation technique, determined by culture and propidium monoazide (PMA) qPCR

    • Journal of Food Protection
    • Manual separation of egg yolk from egg white using the eggshell is common practice in private households. For this, the egg is cracked and both components are separated by passing the egg yolk back and forth between the two halves of the eggshell, allowing the egg white to drip down while the egg yolk remains in the shell.

      • Bacterial pathogens
      • Campylobacter