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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 326 - 350 of 1315

  1. Bacterial Detection and Recovery From Poultry Litter

    • Frontiers in Microbiology
    • The level of pathogens in poultry litter used for raising broiler chickens is critical to the overall health of a broiler chicken flock and food safety. Therefore, it is imperative that methods used for determining bacterial concentration in litter are accurate and reproducible across studies.

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
  2. Application of Bacteriophages to Limit Campylobacter in Poultry Production

    • Frontiers in Microbiology
    • Campylobacter is a major foodborne pathogen with over a million United States cases a year and is typically acquired through the consumption of poultry products. The common occurrence of Campylobacter as a member of the poultry gastrointestinal tract microbial community remains a challenge for optimizing intervention strategies.

      • Campylobacter
      • Bacterial pathogens
  3. Investigating the role of BN-domains of FlhF involved in flagellar synthesis in Campylobacter jejuni

    • Microbiological Research
    • Author(s): Xiaofei Li, Qinwen Chai, Lina Zheng, Pingyu Huang, Ozan Gundogdu, Xinan Jiao, Yuanyue Tang, Jinlin Huang

      • Campylobacter
      • Bacterial pathogens
  4. Hyper-aerotolerant Campylobacter coli, an emerging foodborne pathogen, shows differential expressions of oxidative stress-related genes

    • Veterinary Microbiology
    • Author(s): Jae-Ho Guk, JungHa Woo, Hyokeun Song, Woo-Hyun Kim, Jinshil Kim, Sangryeol Ryu, Seongbeom Cho

      • Campylobacter
      • Bacterial pathogens
  5. Identification of Novel Phage Resistance Mechanisms in Campylobacter jejuni by Comparative Genomics

    • Frontiers in Microbiology
    • Phages infecting Campylobacter jejuni are considered a promising intervention strategy at broiler farms, yet phage sensitivity of naturally occurring poultry isolates is not well studied. Here, we investigated phage sensitivity and identified resistance mechanisms of C. jejuni strains originating from Danish broilers belonging to the most prevalent MLST (ST) types. Determining plaque formation of 51 phages belonging to Fletchervirus or Firehammervirus showed that 21 out of 31 C.

      • Bacterial pathogens
      • Campylobacter
  6. Genomic adaptations of Campylobacter jejuni to long-term human colonization

    • Gut Pathogens
    • Background

      • Campylobacter
      • Bacterial pathogens
  7. The Fate of Foodborne Pathogens in Manure Treated Soil

    • Frontiers in Microbiology
    • The aim of this review was to provide an update on the complex relationship between manure application, altered pathogen levels and antibiotic resistance. This is necessary to protect health and improve the sustainability of this major farming practice in agricultural systems based on high levels of manure production.

      • Campylobacter
      • Salmonella
      • Bacterial pathogens
  8. Isolation and Characterization of Group III Campylobacter jejuni–Specific Bacteriophages From Germany and Their Suitability for Use in Food Production

    • Frontiers in Microbiology
    • Campylobacter spp. are a major cause of bacterial foodborne diarrhea worldwide. While thermophilic Campylobacter species asymptomatically colonize the intestines of chickens, most human infections in industrial countries have been attributed to consumption of chicken meat or cross-contaminated products.

      • Bacterial pathogens
      • Campylobacter
  9. Research Note – MHCY haplotype impacts Campylobacter jejuni colonization in a backcross [(Line 61 x Line N) x Line N] population

    • Poultry Science
    • Author(s): Jibin Zhang, Ronald M. Goto, Androniki Psifidi, Mark P. Stevens, Robert L. Taylor, Marcia M. Miller

      • Campylobacter
      • Bacterial pathogens
  10. Campylobacter Express Resistance Array for detecting the presence of fluoroquinolone‐ and macrolide‐resistant Campylobacter jejuni and Campylobacter coli in broiler farms

    • Journal of Applied Microbiology
    • Journal of Applied Microbiology, Accepted Article. Aims
      The aim of the study was to develop a microarray-based method for the detection of antibiotic-resistant Campylobacter in broiler farms to decrease the risk of contamination of chicken meat.

      • Campylobacter
      • Bacterial pathogens
  11. High Temperature Requirement A (HtrA) protease of Listeria monocytogenes and its interaction with extracellular matrix molecules

    • FEMS Microbiology Letters
    • ABSTRACT High Temperature Requirement A (HtrA) was identified as a secreted virulence factor in many pathogenic bacteria, including Listeria monocytogenes. Recently, it was discovered that Helicobacter pylori and Campylobacter jejuni HtrAs can directly cleave the human cell-adhesion molecule E-cadherin, which facilitates bacterial transmigration. HtrAs also interact with extracellular matrix (ECM) molecules.

      • Campylobacter
      • Listeria monocytogenes
      • Bacterial pathogens
  12. Prevalence and Antimicrobial Resistance Profiles of Foodborne Pathogens Isolated from Dairy Cattle and Poultry Manure Amended Farms in Northeastern Ohio, the United States

    • Antibiotics
    • Foodborne pathogens significantly impact public health globally. Excessive antimicrobial use plays a significant role in the development of the public health crisis of antibiotic resistance. Here, we determined the prevalence and antimicrobial resistance profiles of E. coli O157, Salmonella, L. monocytogenes, and Campylobacter isolated between 2016 and 2020 from small scale agricultural settings that were amended with dairy cattle or poultry manure in Northeastern Ohio.

      • Campylobacter
      • Listeria monocytogenes
      • Salmonella
      • Bacterial pathogens
  13. Prevalence and Characterization of Quinolone Resistance in Campylobacter spp. Isolates in Chicken Livers from Retail Stores in Georgia, USA

    • Journal of Food Protection
    • Campylobacter is the leading bacterial pathogen that causes human foodborne illnesses worldwide and outbreaks have been associated with consumption of under-cooked chicken livers.  The objectives of this study were to compare two PCR assays for speciation of 250 Campylobacter isolates, to assess antibiotic resistance of the isolates, and to analyze genetic diversity of the quinolone resistance determining regions (QRDR) of the isolates.

      • Campylobacter
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  14. Capsular Genotype and Lipooligosaccharide Class Associated Genomic Characterizations of Campylobacter jejuni Isolates From Food Animals in China

    • Frontiers in Microbiology
    • Campylobacter jejuni (C. jejuni) is the leading causative agent of gastroenteritis and Guillain–Barré syndrome (GBS). Capsular polysaccharide (CPS) and lipooligosaccharide (LOS) contribute to the susceptibility of campylobacteriosis, which have been concern the major evaluation indicators of C. jejuni isolates from clinical patients. As a foodborne disease, food animal plays a primary role in the infection of campylobacteriosis. To assess the pathogenic characterizations of C.

      • Bacterial pathogens
      • Campylobacter
  15. A review of antimicrobial resistance in imported foods

    • Canadian Journal of Microbiology
    • Antimicrobial resistance is one of the most serious threats to medical science. Food supply is recognized as a potential source of resistant bacteria, leading to the development of surveillance programs targeting primarily poultry, pork, and beef.

      • Campylobacter
      • Salmonella
      • Bacterial pathogens
  16. Systematic Evaluation of Whole-Genome Sequencing Based Prediction of Antimicrobial Resistance in Campylobacter jejuni and C. coli

    • Frontiers in Microbiology
    • The increasing prevalence of antimicrobial resistance (AMR) in Campylobacter spp. is a global concern. This study evaluated the use of whole-genome sequencing (WGS) to predict AMR in Campylobacter jejuni and C. coli. A panel of 271 isolates recovered from Canadian poultry was used to compare AMR genotype to antimicrobial susceptibility testing (AST) results (azithromycin, ciprofloxacin, erythromycin, gentamicin, tetracycline, florfenicol, nalidixic acid, telithromycin, and clindamycin).

      • Bacterial pathogens
      • Campylobacter
  17. Corrigendum: Bioinformatic Analysis of the Campylobacter jejuni Type VI Secretion System and Effector Prediction

    • Frontiers in Microbiology
      • Bacterial pathogens
      • Campylobacter
  18. Improving Chicken Responses to Glycoconjugate Vaccination Against Campylobacter jejuni

    • Frontiers in Microbiology
    • Campylobacter jejuni is a common cause of diarrheal disease worldwide. Human infection typically occurs through the ingestion of contaminated poultry products. We previously demonstrated that an attenuated Escherichia coli live vaccine strain expressing the C. jejuni N-glycan on its surface reduced the Campylobacter load in more than 50% of vaccinated leghorn and broiler birds to undetectable levels (responder birds), whereas the remainder of the animals was still colonized (non-responders).

      • Bacterial pathogens
      • Campylobacter
  19. A Campylobacter integrative and conjugative element with a CRISPR-Cas9 system targeting competing plasmids: a history of plasmid warfare?

    • Microbiology
    • Microbial genomes are highly adaptable, with mobile genetic elements (MGEs) such as integrative conjugative elements (ICEs) mediating the dissemination of new genetic information throughout bacterial populations. This is countered by defence mechanisms such as CRISPR-Cas systems, which limit invading MGEs by sequence-specific targeting.

      • Campylobacter
      • Bacterial pathogens
  20. Antimicrobial resistance and genomic diversity of Campylobacter jejuni isolates from broiler caeca and neck skin samples collected at key stages during processing.

    • Food Control
    • Author(s): Malgorzata Emanowicz, Joseph Meade, Catherine Burgess, Declan Bolton, John Egan, Helen Lynch, Lisa O'Connor, Aidan Coffey, Brigid Lucey, Montserrat Gutierrez, William Byrne, Rosemarie Slowey, Paul Whyte

      • Campylobacter
      • Bacterial pathogens
  21. A systematic review and meta‐analysis of the efficacy of processing stages and interventions for controlling Campylobacter contamination during broiler chicken processing

    • Comprehensive Reviews in Food Science and Food Safety
    • Comprehensive Reviews in Food Science and Food Safety, EarlyView. Systematic review and meta-analysis were conducted to quantify the effects of processing stages and interventions on the prevalence and concentration of Campylobacter on broiler carcasses.

      • Campylobacter
      • Bacterial pathogens
  22. Molecular Detection of Fluoroquinolone Resistance among Multidrug-, Extensively Drug-, and Pan-Drug-Resistant Campylobacter Species in Egypt

    • Antibiotics
    • In recent times, resistant foodborne pathogens, especially of the Campylobacter species, have created several global crises. These crises have been compounded due to the evolution of multidrug-resistant (MDR) bacterial pathogens and the emergence of extensively drug-resistant (XDR) and pan-drug-resistant (PDR) strains. Therefore, this study aimed to investigate the development of resistance and the existence of both XDR and PDR among Campylobacter isolates.

      • Campylobacter
      • Bacterial pathogens
  23. Biomolecule sulphation and novel methylations related to Guillain-Barré syndrome-associated Campylobacter jejuni serotype HS:19

    • Microbiology
    • strains that produce sialylated lipooligosaccharides (LOS) can cause the immune-mediated disease Guillain-Barré syndrome (GBS).

      • Campylobacter
      • Bacterial pathogens
  24. Experimentally observed Campylobacter jejuni survival kinetics in chicken meat products during model gastric digestion tended to be lower than model predictions

    • Food Microbiology
    • Author(s): Kohei Takeoka, Hiroki Abe, Kento Koyama, Shigenobu Koseki

      • Campylobacter
      • Bacterial pathogens
  25. Correction: Characteristics of hospitalized patients during a large waterborne outbreak of Campylobacter jejuni in Norway

    • PLOS ONE
    • by Nicolay Mortensen, Solveig Aalstad Jonasson, Ingrid Viola Lavesson, Knut Erik Emberland, Sverre Litleskare, Knut-Arne Wensaas, Guri Rortveit, Nina Langeland, Kurt Hanevik

      • Campylobacter
      • Bacterial pathogens