An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 501 - 525 of 1315

  1. Occurrence of Campylobacter spp. in Swedish calves, common sequence types, and antibiotic resistance patterns

    • Journal of Applied Microbiology
    • Aims Cattle are the second most important cause of human campylobacteriosis, after poultry, but there are knowledge gaps regarding Campylobacter in cattle. This study examined the occurrence of Campylobacter, the species present, sequence types, and antibiotic resistance in Swedish cattle. Methods and Results Feces samples collected from 154 calves on seven Swedish farms, and 69 follow‐up samples from a second collection occasion, were analyzed.

      • Bacterial pathogens
      • Campylobacter
  2. Genomic and Phenotypic Characterisation of Campylobacter jejuni Isolates From a Waterborne Outbreak

    • Frontiers in Cellular and Infection Microbiology
    • Campylobacter infections are the leading cause of bacterial gastroenteritis. In Europe, over 246,000 cases are confirmed annually. Infections are often transmitted via contaminated food, such as poultry products, but water may be the source of infection as well. The aim of this study was to characterise a selection of Campylobacter jejuni human isolates, together with a water isolate, from a waterborne outbreak in Norway in 2019, including human isolates from early, mid-, and late epidemic.

      • Bacterial pathogens
      • Campylobacter
  3. Active Packaging of Immobilized Zinc Oxide Nanoparticles Controls Campylobacter jejuni in Raw Chicken Meat

    • Applied and Environmental Microbiology
    • Zinc oxide nanoparticles (ZnO NPs) are regarded as a safe and stable antimicrobial that can inactivate bacteria by several potential working mechanisms. We aimed to incorporate ZnO NPs into packaging material to control Campylobacter in raw chicken meat.

      • Bacterial pathogens
      • Campylobacter
  4. A Mathematical Modeling Approach to Uncover Factors Influencing the Spread of Campylobacter in a Flock of Broiler-Breeder Chickens

    • Frontiers in Microbiology
    • Despite continued efforts to improve biosecurity protocols, Campylobacter continues to be detected in the majority of commercial chicken flocks across Europe. Using an extensive data set of Campylobacter prevalence within a chicken breeder flock for over a year, multiple Bayesian models are presented to explore the dynamics of the spread of Campylobacter in response to seasonal variation, species-specificity, bird health, and total colonization prevalence.

      • Campylobacter
      • Bacterial pathogens
      • Seasonal Produce
      • Produce Safety
  5. Horizontal genetic exchange of chromosomally encoded markers between Campylobacter jejuni cells

    • PLOS ONE
    • by Deepti Pranay Samarth, Young Min Kwon

      • Bacterial pathogens
      • Campylobacter
  6. Spectroscopic Analysis of Chicken Meat Contaminated with E. coli , Salmonella , and Campylobacter

    • Food Analytical Methods
    • The microbiological contamination of food causes concern for public health due to the pathogenic action of microorganisms and the increasing of antimicrobial resistance observed in bacterial strains.

      • Campylobacter
      • Salmonella
      • Bacterial pathogens
  7. Multilocus Sequence Types and Antimicrobial Resistance of Campylobacter jejuni and C. coli Isolates of Human Patients From Beijing, China, 2017–2018

    • Frontiers in Microbiology
    • Campylobacter species are zoonotic pathogens and the leading cause of bacterial enteritis worldwide. With the increase of antimicrobial resistance to fluoroquinolones and macrolides, they have been identified by the World Health Organization (WHO) as high-priority antimicrobial-resistant pathogens. There is currently little known about the prevalence and antimicrobial resistance characteristics of Campylobacter species in Beijing.

      • Campylobacter
      • Bacterial pathogens
  8. Campylobacter jejuni 11168H Exposed to Penicillin Forms Persister Cells and Cells With Altered Redox Protein Activity

    • Frontiers in Cellular and Infection Microbiology
    • The formation of persister cells is one mechanism by which bacteria can survive exposure to environmental stresses. We show that Campylobacter jejuni 11168H forms persister cells at a frequency of 10−3 after exposure to 100 × MIC of penicillin G for 24 h. Staining the cell population with a redox sensitive fluorescent dye revealed that penicillin G treatment resulted in the appearance of a population of cells with increased fluorescence.

      • Campylobacter
      • Bacterial pathogens
  9. RNA-based thermoregulation of a Campylobacter jejuni zinc resistance determinant

    • PLOS Pathogens
    • by Heba Barnawi, Nader Masri, Natasha Hussain, Bushra Al-Lawati, Evita Mayasari, Aleksandra Gulbicka, Adrian J. Jervis, Min-Hsuan Huang, Jennifer S. Cavet, Dennis Linton

      • Campylobacter
      • Bacterial pathogens
  10. Quantitative approach to assess the compliance to a performance objective (PO) of Campylobacter jejuni in poultry meat in France

    • International Journal of Food Microbiology
    • Author(s): Benjamin Duqué, Justine Canon, Nabila Haddad, Sandrine Guillou, Jeanne-Marie Membré

      • Bacterial pathogens
      • Campylobacter
  11. Genotyping and Antibiotic Resistance Traits in Campylobacter jejuni and coli From Pigs and Wild Boars in Italy

    • Frontiers in Cellular and Infection Microbiology
    • The present study investigated the genomic constitution and antimicrobial resistance (AMR) of 238 Campylobacter from pigs and wild boars in Italy between 2012 and 2019. Campylobacter strains were genotyped using multilocus sequence typing (MLST) and whole genome MLST (wgMLST), screened for antimicrobial resistance genes, and tested for phenotypic susceptibility to six different antibiotics. C. coli was detected in 98.31% and 91.66% of pigs and wild boars, while C.

      • Bacterial pathogens
      • Campylobacter
  12. Campylobacter jejuni Cas9 Modulates the Transcriptome in Caco-2 Intestinal Epithelial Cells

    • Genes
    • The zoonotic human pathogen Campylobacter jejuni is known for its ability to induce DNA-damage and cell death pathology in humans. The molecular mechanism behind this phenomenon involves nuclear translocation by Cas9, a nuclease in C. jejuni (CjeCas9) that is the molecular marker of the Type II CRISPR-Cas system. However, it is unknown via which cellular pathways CjeCas9 drives human intestinal epithelial cells into cell death. Here, we show that CjeCas9 released by C.

      • Campylobacter
      • Bacterial pathogens
  13. Genome Sequence of a Persistent Campylobacter jejuni Strain, 2016-IZSVE-19-111250

    • Microbiology Resource Announcements
    • In this report, we present the whole-genome sequence of a Campylobacter jejuni strain isolated recursively for the last 3 years from an Italian poultry farm.

      • Campylobacter
      • Bacterial pathogens
  14. Draft Genome Sequences of Two Campylobacter jejuni Strains That Show Significantly Different Colonization Potentials in Chickens

    • Microbiology Resource Announcements
    • Here, we report the draft genome sequences of robust (A74/C_24-3) and poor (A74/O_2-2) chicken-colonizing Campylobacter jejuni isolates. Whole-genome sequence analyses of these isolates will be helpful in facilitating further studies to identify genetic factors used in chicken colonization.

      • Campylobacter
      • Bacterial pathogens
  15. Impact of pH on efficacy of peroxy acetic acid (PAA) against Salmonella, Campylobacter and Escherichia coli on chicken wings

    • Poultry Science
    • Author(s): S. Vaddu, J. Kataria, E.N. Rama, A.E. Moller, A. Gouru, M. Singh, H. Thippareddi

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
  16. Search for Campylobacter spp. Reveals High Prevalence and Pronounced Genetic Diversity of Arcobacter butzleri in Floodwater Samples Associated with Hurricane Florence in North Carolina, USA

    • Applied and Environmental Microbiology
    • In September 2018, Hurricane Florence caused extreme flooding in eastern North Carolina, USA, a region highly dense in concentrated animal production, especially swine and poultry. In this study, floodwater samples (n = 96) were collected as promptly post-hurricane as possible and for up to approximately 30 days and selectively enriched for Campylobacter using Bolton broth enrichment and isolation on modified charcoal cefoperazone deoxycholate agar (mCCDA) microaerobically at 42°C.

      • Campylobacter
      • Bacterial pathogens
  17. Arcobacter Identification and Species Determination Using Raman Spectroscopy Combined with Neural Networks

    • Applied and Environmental Microbiology
    • Rapid and accurate identification of Arcobacter is of great importance because it is considered an emerging food- and waterborne pathogen and potential zoonotic agent. Raman spectroscopy can differentiate bacteria based on Raman scattering spectral patterns of whole cells in a fast, reagentless, and easy-to-use manner. We aimed to detect and discriminate Arcobacter bacteria at the species level using confocal micro-Raman spectroscopy (785 nm) coupled with neural networks.

      • Campylobacter
      • Bacterial pathogens
  18. A Multicenter Proposal for a Fast Tool To Screen Biosecure Chicken Flocks for the Foodborne Pathogen Campylobacter

    • Applied and Environmental Microbiology
    • The present multicenter study aimed at assessing the performance of air sampling as a novel method for monitoring Campylobacter in biosecure poultry farms. We compared, using a harmonized procedure, the bacteriological isolation protocol (ISO 10272-1:2017) and a real-time PCR method used on air filter samples. Air samples and boot swabs were collected from 62 biosecure flocks from five European countries during the summer of 2019.

      • Campylobacter
      • Bacterial pathogens
  19. Refined Functional Carbohydrates reduce adhesion of Salmonella and Campylobacter to poultry epithelial cells in vitro

    • Poultry Science
    • Author(s): L.K. Froebel, L.E. Froebel, T. Duong

      • Campylobacter
      • Salmonella
      • Bacterial pathogens
  20. Effect of processing on the microbiological quality and safety of chicken carcasses at slaughterhouse

    • International Journal of Food Science & Technology
    • SUMMARY Microbiological contamination of chicken meat depends on the conditions under which the animals are reared, slaughtered and processed. The aim of this study was to determine the influence of farm origin and processing stages at slaughterhouse on the microbial safety and quality of chicken. Samples of chicken carcasses from three different farms were taken from a slaughterhouse.

      • Campylobacter
      • Listeria monocytogenes
      • Salmonella
      • Bacterial pathogens
  21. Analysis of the Zonula occludens Toxin Found in the Genome of the Chilean Non-toxigenic Vibrio parahaemolyticus Strain PMC53.7

    • Frontiers in Cellular and Infection Microbiology
    • Vibrio parahaemolyticus non-toxigenic strains are responsible for about 10% of acute gastroenteritis associated with this species, suggesting they harbor unique virulence factors. Zonula occludens toxin (Zot), firstly described in Vibrio cholerae, is a secreted toxin that increases intestinal permeability. Recently, we identified Zot-encoding genes in the genomes of highly cytotoxic Chilean V. parahaemolyticus strains, including the non-toxigenic clinical strain PMC53.7.

      • Campylobacter
      • Vibrio
      • Bacterial pathogens
  22. An in vitro investigation of the survival and/or growth of Campylobacter jejuni in broiler digestate from different feed types

    • Letters in Applied Microbiology
    • Campylobacter spp. is the leading cause of bacterial gastroenteritis worldwide and poultry are the primary reservoir. The aim of this study was to investigate the survival and/or growth of C. jejuni NCTC 11168 in broiler digestate prepared from commercial starter, grower and finisher feed formulations. Bolton broth and digestates were prepared, inoculated with C. jejuni NCTC 11168 (approximately 3 log10 CFU per ml) and incubated under microaerobic conditions at 42°C for 24 hours.

      • Bacterial pathogens
      • Campylobacter
  23. Functional analysis and cryo-electron microscopy of Campylobacter jejuni serine protease HtrA

    • Gut Microbes
    • Campylobacter jejuni is a predominant zoonotic pathogen causing gastroenteritis and other diseases in humans. An important bacterial virulence factor is the secreted serine protease HtrA (HtrA Cj ), which targets tight and adherens junctional proteins in the gut epithelium. Here we have investigated the function and structure of HtrA Cj using biochemical assays and cryo-electron microscopy.

      • Bacterial pathogens
      • Campylobacter
  24. Performance Evaluation of the Novodiag Bacterial GE+ Multiplex PCR Assay

    • Journal of Clinical Microbiology
    • The bacteriological diagnosis of intestinal bacterial infections has historically been based on culture on agar plates. However, culture may lack sensitivity, and some enteropathogens, such as pathovars of Escherichia coli, may escape routine diagnosis. Our goal was to evaluate the analytical performance of the Novodiag Bacterial GE+ kit for the detection of enteropathogenic bacteria in acute community diarrhea. We included 251 stools in this study (198 retrospective and 53 prospective).

      • Salmonella
      • Yersinia
      • Shigella
      • Bacterial pathogens
      • Campylobacter
  25. Comparison of Molecular Subtyping and Antimicrobial Resistance Detection Methods Used in a Large Multistate Outbreak of Extensively Drug-Resistant Campylobacter jejuni Infections Linked to Pet Store Puppies

    • Journal of Clinical Microbiology
    • Campylobacter jejuni is a leading cause of enteric bacterial illness in the United States. Traditional molecular subtyping methods, such as pulsed-field gel electrophoresis (PFGE) and 7-gene multilocus sequence typing (MLST), provided limited resolution to adequately identify C. jejuni outbreaks and separate out sporadic isolates during outbreak investigations. Whole-genome sequencing (WGS) has emerged as a powerful tool for C. jejuni outbreak detection.

      • Bacterial pathogens
      • Campylobacter