An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 16 of 16

  1. Disparities in Antiviral Treatment Among Adults With Hepatitis B Cirrhosis: An Analysis of the National Veterans Affairs Cohort

    • Clinical Infectious Diseases
    • Timely antiviral therapy is critical in chronic hepatitis B cirrhosis to prevent further liver complications. Among a national cohort of US Veterans with chronic hepatitis B cirrhosis, only 52% were initiated on antiviral therapy; treatment was significantly lower among patients of non-Asian ethnicity, high-risk alcohol use, and in rural settings.

      • Viruses
      • Hepatitis
  2. Latent Tuberculosis Infection Testing Practices in a Large US Integrated Healthcare System

    • Clinical Infectious Diseases
    • Background Tuberculosis (TB) is a public health threat, with >80% of active TB in the United States occurring due to reactivation of latent TB infection (LTBI). We may be underscreening those with high risk for LTBI and overtesting those at lower risk. A better understanding of gaps in current LTBI testing practices in relation to LTBI test positivity is needed.

      • Viruses
      • Hepatitis
  3. National Landscape of Human Immunodeficiency Virus–Positive Deceased Organ Donors in the United States

    • Clinical Infectious Diseases
    • Background Organ transplantation from donors with human immunodeficiency virus (HIV) to recipients with HIV (HIV D+/R+) presents risks of donor-derived infections. Understanding clinical, immunologic, and virologic characteristics of HIV-positive donors is critical for safety.

      • Viruses
      • Hepatitis
  4. Pradefovir Treatment in Patients With Chronic Hepatitis B: Week 24 Results From a Multicenter, Double-Blind, Randomized, Noninferiority, Phase 2 Trial

    • Clinical Infectious Diseases
    • Background Pradefovir is a liver-targeted prodrug of adefovir, a nucleoside/nucleotide analogue with antiviral activity against hepatitis B virus (HBV) DNA polymerase. This phase 2 study compared the efficacy and safety of oral pradefovir (30, 45, 60, or 75 mg) versus tenofovir disoproxil fumarate (TDF; 300 mg) and aimed to identify the most appropriate dose of pradefovir for the forthcoming phase 3 study.

      • Viruses
      • Hepatitis
  5. Evolution of Fatty Liver Disease and Relationship With Lipoproteins and Clinical Outcomes in Hepatitis B/Human Immunodeficiency Virus Coinfection

    • Clinical Infectious Diseases
    • Background Fatty liver disease (FLD) and hepatitis B virus (HBV) infection occur commonly in human immunodeficiency virus (HIV). FLD resolution is associated with improvement in lipoproteins in HIV-uninfected patients. We evaluated changes in FLD in an HBV/HIV-coinfected cohort. Methods One hundred eight HBV/HIV-coinfected adults with baseline liver biopsies were followed every 24 weeks (median, 166 weeks) and 60 had follow-up biopsies.

      • Viruses
      • Hepatitis
  6. Optimal Threshold of Controlled Attenuation Parameter for Detection of HIV-Associated NAFLD With Magnetic Resonance Imaging as the Reference Standard

    • Clinical Infectious Diseases
    • Background Controlled attenuation parameter (CAP) is an ultrasound-based point-of-care method to quantify liver fat; however, the optimal threshold for CAP to detect pathologic liver fat among persons living with human immunodeficiency virus (HIV; PLWH) is unknown.

      • Hepatitis
      • Viruses
  7. Vaccination Status of Alaska Native Persons With Hepatitis A Virus Infection—Alaska, 1996–2018

    • Clinical Infectious Diseases
    • Following increases in reported cases of hepatitis A, we assessed the impact of hepatitis A vaccine in Alaska Native persons. During 1996–2018, only 6 cases of hepatitis A were identified, all in unvaccinated adults. Populations can be protected against hepatitis A by achieving sufficient vaccination coverage over time.

      • Hepatitis
      • Viruses
  8. Susceptibility to Hepatitis A Virus Infection in the United States, 2007–2016

    • Clinical Infectious Diseases
    • Background Despite national immunization efforts, including universal childhood hepatitis A (HepA) vaccination recommendations in 2006, hepatitis A virus (HAV)–associated outbreaks have increased in the United States. Unvaccinated or previously uninfected persons are susceptible to HAV infection, yet the susceptibility in the US population is not well known.

      • Hepatitis
      • Viruses
  9. Cannabis Use and Plasma Human Immunodeficiency Virus (HIV) RNA Levels in Patients Coinfected With HIV and Hepatitis C Virus Receiving Antiretroviral Therapy: Data From the ANRS CO13 HEPAVIH Cohort

    • Clinical Infectious Diseases
    • To the Editor—Chaillon et al [1] reported interesting results on the effect of cannabis use on the human immunodeficiency virus (HIV) reservoir during suppressive antiretroviral therapy (ART) among 48 men who have sex with men (MSM) with primary or recent HIV infection, followed up over 2 years after ART initiation.

      • Hepatitis
      • Viruses
  10. Hepatitis C Virus RNA Is Commonly Detectable in Rectal and Nasal Fluids of Patients With High Viremia

    • Clinical Infectious Diseases
    • Background Increasing numbers of hepatitis C virus (HCV) infections among men who have sex with men (MSM) are being observed in the Western world. The actual routes of HCV transmission during high-risk sex practices and associated drug use remain poorly understood. Methods Forty-seven patients with HCV were prospectively enrolled. Rectal and nasal swabs were collected to quantify HCV-RNA levels within rectal and nasal fluids.

      • Viruses
      • Hepatitis
  11. Prevalence of Hepatitis A Immunity and Decision-tree Analysis Among Men Who Have Sex With Men and Are Living With Human Immunodeficiency Virus in Tokyo

    • Clinical Infectious Diseases
    • Background Hepatitis A virus (HAV) can be sexually transmitted. However, the level of HAV immunity among patients living with human immunodeficiency virus (HIV) in Japan is unknown. Determining the epidemiology of HAV infections among men who have sex with men (MSM) and who are living with HIV is essential for an HAV vaccination program.

      • Hepatitis
      • Viruses
  12. Public Health Intervention Strategies to Contain Hepatitis A Outbreaks

    • Clinical Infectious Diseases
    • To the Editor—We read with interest the recent article by Koibuchi et al [1] that provides further suggestions for a hepatitis A virus (HAV) vaccination program with decision-tree and cost-effectiveness analyses. However, we have several concerns about the findings and conclusions in this study during the ongoing outbreak of acute hepatitis A in Tokyo.

      • Hepatitis
      • Viruses
  13. Reply to Lin et al

    • Clinical Infectious Diseases
    • To the Editor—We are honored that Lin at al read our article [1] with interest and thank them for their valuable comments [2].

      • Hepatitis
      • Viruses
  14. Prevalence of Hepatitis B Virus Infection Among US Adults Aged 20–59 Years With a History of Injection Drug Use: National Health and Nutrition Examination Survey, 2001–2016

    • Clinical Infectious Diseases
    • Background Hepatitis B virus (HBV) can transmit through needle sharing. The national HBV infection prevalence in persons who inject drugs remains ill-defined. We estimated the prevalence of total HBV core antibody (anti-HBc) positivity, indicating a previous or ongoing HBV infection, among adults aged 20–59 years with an injection drug use (IDU) history. We compared select characteristics by anti-HBc status.

      • Hepatitis
      • Viruses
  15. Effect of a Hepatitis A Vaccination Campaign During a Hepatitis A Outbreak in Taiwan, 2015–2017: A Modeling Study

    • Clinical Infectious Diseases
    • Background Beginning from 2015–2016, unprecedented large outbreaks of acute hepatitis A that predominantly affected men who have sex with men (MSM) reemerged across the continents. We assessed the impact of an early initiated hepatitis A virus (HAV) vaccination campaign that targeted MSM living with human immunodeficiency virus (HIV) during the 2015–2017 hepatitis A outbreak in Taiwan.

      • Viruses
      • Hepatitis
  16. A Color-conscious Diagnosis

    • Clinical Infectious Diseases
    • A 36-year-old man from Russia was admitted with disseminated extensively drug-resistant (XDR) tuberculosis. He had clinical, radiological, and microbiological evidence of pulmonary tuberculosis and tuberculosis meningitis. Culture of the Mycobacterium tuberculosis from his cerebrospinal fluid revealed it to be XDR.

      • Bacterial pathogens
      • Viruses
      • Hepatitis