An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 101 - 125 of 2094

  1. Characterization of Escherichia coli and other bacteria isolated from condemned broilers at a Danish abattoir

    • Frontiers in Microbiology
    • Meat inspection is important to ensure food safety and protect public health. Visual inspection of slaughtered carcasses for pathological changes should be supported by bacteriological analysis to determine whether the entire carcass or parts of it should be condemned. The aim of this study was to determine the bacterial species present in different sample types from condemned broiler carcasses.

      • Viruses
      • Hepatitis
  2. Serological Searching for Hepatitis E Virus Infection Among Pig Liver Transudate from Bulgaria: An Alternative Method for Seroepidemiological Survey

    • Vector-Borne and Zoonotic Diseases
    • Background: The aim of this research was to perform a seroepidemiological survey of hepatitis E virus (HEV) by an alternative method—serological establishment of the virus from pig liver transudate. This is the first such research in Bulgaria. Moreover, no studies have been conducted on HEV in pig liver in our country.

      • Viruses
      • Hepatitis
  3. Integrated analysis reveals effects of bioactive ingredients from Limonium Sinense (Girard) Kuntze on hypoxia-inducible factor (HIF) activation

    • Frontiers in Plant Science
    • Limonium Sinense (Girard) Kuntze is a traditional Chinese medicinal herb, showing blood replenishment, anti-tumour, anti-hepatitis, and immunomodulation activities amongst others. However, the mechanism of its pharmacological activities remains largely unknown. Here, we investigated the effects of bioactive ingredients from Limonium Sinense using an integrated approach.

      • Viruses
      • Hepatitis
  4. Bioaccumulation Dynamic by Crassostrea gigas Oysters of Viruses That Are Proposed as Surrogates for Enteric Virus Contamination in Environmental Samples

    • Food and Environmental Virology
    • Oysters are filter-feeders and retain sewage-derived pathogens in their organs or tissues. Since most enteric viruses involved in outbreaks cannot grow in cell culture, studies using viral surrogate models are essential. Some species are proposed as surrogates for enteric viruses in environmental samples, including in bivalve mollusk samples, such as murine norovirus type 1 (MNV-1) and somatic (as φX) or F-specific coliphages (as MS2) bacteriophages.

      • Viruses
      • Norovirus
  5. Use of bentonite-coated activated carbon for improving the sensitivity of RT-qPCR detection of norovirus from vegetables and fruits: The ISO 15216-1:2017 standard method extension

    • Food Microbiology
    • Produce-related foodborne outbreaks are becoming increasingly prevalent worldwide. In plant tissues, various compounds, including polysaccharidesphenolic compounds, and chlorophyll, can inhibit RT-PCR detection of viruses.

      • Viruses
      • Norovirus
  6. Recent trends and developments of PCR-based methods for the detection of food-borne Salmonella bacteria and Norovirus

    • Journal of Food Science and Technology
    • In recent years, rapid detection methods such as polymerase chain reaction (PCR) and quantitative real-time PCR (qPCR) have been continuously developed to improve the detection of food-borne pathogens in food samples. The recent developments of PCR and qPCR in the detection and identification of these food-borne pathogens are described and elaborated throughout this review.

      • Bacterial pathogens
      • Salmonella
      • Viruses
      • Norovirus
  7. Integrated Transcriptomic and Proteomic Analysis Identifies Plasma Biomarkers of Hepatocellular Failure in Alcohol-Associated Hepatitis

    • The American Journal of Pathology
    • Alcohol-associated hepatitis (AH) is a form of liver failure with high short-term mortality. Recent results have shown that HNF4a defective function and systemic inflammation are major disease drivers of AH. Plasma biomarkers of hepatocyte function could be useful for diagnostic and prognostic purposes.

      • Viruses
      • Hepatitis
  8. Black ginseng protects against Western diet‐induced nonalcoholic steatohepatitis by modulating the TLR4/NF‐κB signaling pathway in mice

    • Journal of Food Biochemistry
    • Journal of Food Biochemistry, EarlyView. Black ginseng (BG) shows beneficial effects on liver injury, but the related mechanism has not been fully revealed. This study attempted to investigate the protective effects and associated mechanisms of BG against nonalcoholic steatohepatitis (NASH). Twelve ginsenosides in BG were annotated by ultrahigh performance liquid chromatography combined with high resolution mass spectrometry (UHPLC-HRMS).

      • Viruses
      • Hepatitis
  9. Differences in the effectiveness of the high-efficient concentrated pretreatment method on the norovirus detection in oysters and mussels

    • International Journal of Food Microbiology
    • Oysters and mussels are important vectors for norovirus (NoV). An efficient pretreatment method for NoV detection in oysters based on ISO 15216-2:2019 was established in our previous work, but its effectiveness for other types of shellfish remains unknown. Therefore, this study systematically compared the differences between the standard and modified ISO methods in detecting NoV for oysters and mussels.

      • Viruses
      • Norovirus
  10. Seed- and leaf-based expression of FGF21-transferrin fusion proteins for oral delivery and treatment of non-alcoholic steatohepatitis

    • Frontiers in Plant Science
    • Non-alcoholic steatohepatitis (NASH) is a global disease with no effective medication. The fibroblast growth factor 21 (FGF21) can reverse this liver dysfunction, but requires targeted delivery to the liver, which can be achieved via oral administration.

      • Viruses
      • Hepatitis
  11. Microgreen Variety Impacts Leaf Surface Persistence of a Human Norovirus Surrogate

    • Food and Environmental Virology
    • Human norovirus (HuNoV) is a pathogenic agent that is frequently associated with foodborne disease outbreaks linked to fresh produce. Within microgreen production systems, understanding of virus transmission routes and persistence is limited. To investigate virus persistence on microgreen leaf surfaces, this study mimicked virus contaminations caused during microgreen handling by farm workers or during overhead irrigation with contaminated water.

      • Viruses
      • Norovirus
  12. Hepatitis E virus in Cuba: A cross‐sectional serological and virological study in pigs and people occupationally exposed to pigs

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Surveillance of hepatitis E virus (HEV) in risk groups is an important strategy to monitor its circulation pattern and to timely detect changes thereof. The aims of this cross-sectional study were to estimate the prevalence of HEV infections in pigs and humans from different regions of the country, to identify risk factors for increasing anti-HEV IgG prevalence and to characterize HEV strains.

      • Viruses
      • Hepatitis
  13. A systematic review and meta-analysis indicates a substantial burden of human noroviruses in shellfish worldwide, with GII.4 and GII.2 being the predominant genotypes

    • Food Microbiology
    • Human noroviruses (HuNoVs) have been found as the leading cause of acute gastroenteritis outbreaks in all age groups and are significantly correlated with the consumption of shellfish. In this study, the contamination of HuNoVs in shellfish was estimated through a systematic review and meta-analysis. Studies on the contamination of HuNoVs in shellfish were searched from PubMed, Web of Science, Embase, and Cochrane Library from January 2000 to August 2021.

      • Viruses
      • Norovirus
  14. Recent Developments in Norovirus Interactions with Bacteria

    • Current Opinion in Food Science
    • Human norovirus is the leading cause of foodborne illness in the United States. Among many of the challenges related to understanding and controlling noroviruses, the influence of host microbiota on viral pathogenesis has continued to remain the subject of increased focus. Foundational work previously suggested that some bacteria may directly interact with noroviruses and promote infection.

      • Viruses
      • Norovirus
  15. Soluble extracellular polymeric substance (SEPS) of histo-blood group antigen (HBGA) expressing bacterium Sphingobacterium sp. SC015 influences the survival and persistence of norovirus on lettuce

    • Food Microbiology
    • Foodborne norovirus (NoV) outbreaks linked to leafy greens are common due to a lack of efficient strategies to prevent NoV spread from contaminated surfaces. We previously found that Sphingobacterium sp. SC015 in lettuce phyllosphere expresses histo-blood group antigen (HBGA)-like substances in soluble extracellular polymeric substances (SEPS) that contribute to NoV adherence on lettuce.

      • Viruses
      • Norovirus
  16. Monitoring of hepatitis E virus in zoo animals from Spain, 2007–2021

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Hepatitis E virus (HEV, family Hepeviridae) is an important emerging and zoonotic pathogen. In recent decades, the number of human cases of zoonotic hepatitis E has increased considerably in industrialized countries and HEV has been detected in an expanding range of mammal species.

      • Viruses
      • Hepatitis
  17. Current treatment of chronic hepatitis B: Clinical aspects and future directions

    • Frontiers in Microbiology
    • Hepatitis B virus (HBV) infection is a public health threat worldwide, and there is no direct treatment yet available. In the event of infection, patients may present liver cirrhosis and cancer, which threaten the patients’ health globally, especially in the Asia-Pacific region and China. In 2019, Chinese hepatopathologists updated the 2015 Guidelines for the Prevention and Treatment of Chronic Hepatitis B as the clinical reference.

      • Viruses
      • Hepatitis
  18. Rapid and direct detection of hepatitis E virus in raw pork livers by recombinase polymerase amplification assays

    • Frontiers in Cellular and Infection Microbiology
    • Hepatitis E virus (HEV) is a zoonotic pathogen that causes global hepatitis E. Outbreaks of hepatitis E are directly linked to the consumption of pork liver products. Herein reverse transcription recombinase polymerase amplification assays targeting the ORF2 gene were developed for the rapid detection of HEV by integrating the fluorescence detection platform (qRT-RPA) and the visible lateral flow biosensor by naked eyes (LFB RT-RPA).

      • Viruses
      • Hepatitis
  19. Examining the Effect of Organic Acids on Inactivation of Hepatitis E Virus

    • Journal of Food Protection
    • Infection with hepatitis E virus genotype 3 (HEV-3) is an emerging cause of illness in developed countries. In North America and Europe, HEV-3 has been increasingly detected in swine, and exposure to pigs and pork products is considered the primary source of infection. We have previously demonstrated the prevalence of the HEV-3 genome in commercial pork products in Canada.

      • Viruses
      • Hepatitis
  20. Quantification of hepatitis E virus in raw pork livers using droplet digital RT-PCR

    • Food Microbiology
    • Hepatitis E virus (HEV) is the causative agent of hepatitis E. Some of the rise in hepatitis E infection in China may be linked to undercooked pork. In this study, we established a reverse transcription droplet digital PCR (RT-ddPCR) method to detect HEV in raw pork livers. The detection limit of the assay for HEV RNA was as low as 1.81 copies/μL.

      • Viruses
      • Hepatitis
  21. Global public health implications of human exposure to viral contaminated water

    • Frontiers in Microbiology
    • Enteric viruses are common waterborne pathogens found in environmental water bodies contaminated with either raw or partially treated sewage discharge. Examples of these viruses include adenovirus, rotavirus, noroviruses, and other caliciviruses and enteroviruses like coxsackievirus and polioviruses.

      • Viruses
      • Hepatitis
      • Norovirus
  22. Interactions Between Infectious Foodborne Viruses and Bacterial Biofilms Formed on Different Food Contact Surfaces

    • Food and Environmental Virology
    • Bacterial biofilms contribute to contamination, spoilage, persistence, and hygiene failure in the food industry, but relatively little is known about the behavior of foodborne viruses evolving in the complex communities that make up biofilm. The aim of this study was to evaluate the association between enteric viruses and biofilms on food contact surfaces.

      • Viruses
      • Hepatitis
      • Norovirus
  23. Hepatitis E Virus in Water Environments: A Systematic Review and Meta-analysis

    • Food and Environmental Virology
    • Hepatitis E virus (HEV) is responsible for acute hepatitis in humans, through foodborne, zoonotic, and waterborne transmission routes. This study aimed to assess the prevalence of HEV in water matrices. Six categories were defined: untreated and treated wastewater, surface water (river, lake, and seawater), drinking water, groundwater, and other water environments (irrigation water, grey water, reservoir water, flood water, and effluent of pig slaughterhouse).

      • Viruses
      • Hepatitis
  24. Detection of hepatitis E virus in milk: current evidence for viral excretion in a wide range of mammalian hosts

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Infection with hepatitis E virus (HEV) is common in both developing and industrialized nations. Genotypes 3 and 4 are increasingly being reported, particularly in high-income countries where the precise extent of HEV transmission via food is currently unclear.

      • Viruses
      • Hepatitis
  25. The Efficacy of Commercial Surface Sanitizers against Norovirus on Formica Surfaces with and without Inclusion of a Wiping Step

    • Applied and Environmental Microbiology
    • Applied and Environmental Microbiology, Ahead of Print. Commonly used surface sanitizers often lack activity against human noroviruses (hNoVs). The impact of inactivation versus removal when these products are applied via wiping is poorly characterized.

      • Viruses
      • Norovirus