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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 251 - 275 of 429

  1. Whole-Genome Analysis of a Shiga Toxin-Producing Escherichia coli O103:H2 Strain Isolated from Cattle Feces

    • Microbiology Resource Announcements
    • Shiga toxin-producing Escherichia coli (STEC) serotype O103 is one of the primary pathogenic contaminants of beef products, contributing to several foodborne outbreaks in recent years. Here, we report the whole-genome sequence of a STEC O103:H2 strain isolated from cattle feces that contains a locus of enterocyte effacement (LEE) pathogenicity island.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  2. Pathogenic potential of Escherichia coli O157 and O26 isolated from young Belgian dairy calves by recto‐anal mucosal swab culturing

    • Journal of Applied Microbiology
    • Aims The purpose of this study was to investigate the occurrence of E. coli O157 and O26 on Belgian dairy cattle farms, the presence of virulence genes in the confirmed isolates, and the association of E. coli O26 presence with calf diarrhea. Methods and Results In total, 233 recto‐anal mucosal swabs (RAMS) were obtained from healthy and diarrheic dairy calves on three farms, each alternately visited three consecutive times. RAMS were analyzed for presence of E.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  3. The effects of environmental factors on the prevalence and diversity of bacteriophages lytic against the top six non‐O157 Shiga toxin‐producing Escherichia coli on an organic farm

    • Journal of Food Safety
    • The research showed that ruminant animal is the primary factor contributing to the prevalence of the STEC‐infecting phages on the organic farm in this study. Among environmental factors, high rain precipitation is likely to facilitate phage distribution in the surrounding environment of the farm. Most importantly, the presence of these phages has a negative correlation with their STEC hosts.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  4. Acid resistance of E. coli O157:H7 and O26:H11 exposure to lactic acid revealed by transcriptomic analysis

    • LWT
    • Author(s): Lanlin Yu, Su Zhang, Yuanyuan Xu, Xiaoyu Mi, Tong Xing, Jiaolong Li, Lin Zhang, Feng Gao, Yun Jiang

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  5. Genetic and Phenotypic Factors Associated with Persistent Shedding of Shiga Toxin-Producing Escherichia coli by Beef Cattle

    • Applied and Environmental Microbiology
    • Shiga toxin-producing Escherichia coli (STEC) is a leading cause of foodborne infections. Cattle are an important STEC reservoir, although little is known about specific pathogen traits that impact persistence in the farm environment. Hence, we sought to evaluate STEC isolates recovered from beef cattle in a single herd in Michigan. To do this, we collected fecal grabs from 26 cattle and resampled 13 of these animals at 3 additional visits over a 3-month period.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  6. Shiga Toxin-Producing Escherichiacoli in Feces of Finisher Pigs: Isolation, Identification and Public Health Implications of Major and Minor Serogroups

    • Journal of Food Protection
    • Shiga toxin-producing Escherichia coli (STEC) are major foodborne human pathogens that cause mild to hemorrhagic colitis, which could lead to complications of hemolytic uremic syndrome.  Seven serogroups, O26, O45, O103, O111, O121, O145 and O157, account for the majority of the STEC illnesses in the US.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  7. Thermal Resistance of Single Strains of Shiga Toxin-Producing Escherichia coli O121:H19 and O157:H7 Based on Culture Preparation Method and Osmolyte-Reduced Water Activity

    • Journal of Food Protection
    • Pathogen thermal resistance studies on low-water activity foods (LWAF) use a variety of methods to inoculate food, as well as strategies to reduce water activity, which can influence thermal resistance observations.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  8. Virulence Characteristics and Antibiotic Resistance Profiles of Shiga Toxin-Producing Escherichia coli Isolates from Diverse Sources

    • Antibiotics
    • Shiga toxin-producing Escherichia coli (STEC) is an enteric pathogen that causes several gastrointestinal ailments in humans across the world. STEC’s ability to cause ailment is attributed to the presence of a broad range of known and putative virulence factors (VFs) including those that encode Shiga toxins. A total of 51 E.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  9. Effects of bacteriophage on inhibition and removal of mixed biofilm of enterohemorrhagic Escherichia coli O157:H7 and O91:H-

    • LWT
    • Author(s): Yu Zhang, Kumiko Shigemura, Hoang Minh Duc, Cunkuan Shen, Hung-Hsin Huang, Jun Sato, Yoshimitsu Masuda, Ken-ichi Honjoh, Takahisa Miyamoto

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  10. Multiplex PCR Assays for the Detection of One Hundred and Thirty Seven Serogroups of Shiga Toxin-Producing Escherichia coli Associated With Cattle

    • Frontiers in Cellular and Infection Microbiology
    • Escherichia coli carrying prophage with genes that encode for Shiga toxins are categorized as Shiga toxin-producing E. coli (STEC) pathotype. Illnesses caused by STEC in humans, which are often foodborne, range from mild to bloody diarrhea with life-threatening complications of renal failure and hemolytic uremic syndrome and even death, particularly in children. As many as 158 of the total 187 serogroups of E.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  11. High-resolution melting real-time PCR assays for detection of Escherichia coli O26 and O111 strains possessing Shiga toxin genes

    • LWT
    • Author(s): Prashant Singh, Gabriel Cubillos, Gabrielle Kirshteyn, Joseph M. Bosilevac

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  12. Bacteriophage biocontrol of Shiga toxigenic Escherichia coli (STEC) O145 biofilms on stainless steel reduces the contamination of beef

    • Food Microbiology
    • Author(s): Changbao Wang, Hua Hang, Shoubiao Zhou, Yan D. Niu, Hechao Du, Kim Stanford, Tim A. McAllister

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  13. Are Antimicrobial Interventions Associated with Heat-Resistant Escherichia coli on Meat?

    • Applied and Environmental Microbiology
    • Decontamination practices, which often involve thermal treatments, are routinely performed in beef packing plants and have generally improved the safety of meat in North America. We investigated whether Escherichia coli in the beef production chain is becoming more heat resistant due to those treatments. Cattle isolates (n = 750) included seven serogroups (O157, O103, O111, O121, O145, O26, and O45) which were collected between 2002 and 2017.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  14. Genes Encoding the Virulence and the Antimicrobial Resistance in Enterotoxigenic and Shiga-Toxigenic E. coli Isolated from Diarrheic Calves

    • Toxins
    • Calf diarrhea is one of the considerable infectious diseases in calves, which results in tremendous economic losses globally. To determine the prevalence of Shiga-toxigenic E. coli (STEC) and Enterotoxigenic E.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  15. Overall changes in the transcriptome of Escherichia coli O26:H11 induced by a subinhibitory concentration of ciprofloxacin

    • Journal of Applied Microbiology
    • Aims The goal was to explore the effects of subinhibitory concentration (SIC) (0.5 MIC=20 µg L‐1) of ciprofloxacin on the transcriptome of enterohemorrhagic Escherichia coli O26:H11 (EHEC) isolate by 60 minutes of exposure. Materials and Results We used a combination of comparative genomic and transcriptomic (RNAseq) analyses. The whole genome of the E. coli O26:H11 #30934 strain of bovine origin was sequenced and assembled.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  16. Analysis of bacterial diversity in relation to presence of Top 7 Shiga toxin-producing Escherichia coli (STEC) throughout Australian beef abattoirs

    • Journal of Food Protection
    • There is increasing evidence that diversity changes in bacterial communities of beef cattle correlates to the presence of Shiga toxin-producing Escherichia coli (STEC). However, studies that found an association between STEC and bacterial diversity have been focused on pre-slaughter stages in the beef supply chain.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  17. Activity of Bacteriophage and Complex Tannins against Biofilm-Forming Shiga Toxin-Producing Escherichia coli from Canada and South Africa

    • Antibiotics
    • Bacteriophages, natural killers of bacteria, and plant secondary metabolites, such as condensed tannins, are potential agents for the control of foodborne pathogens. The first objective of this study evaluated the efficacy of a bacteriophage SA21RB in reducing pre-formed biofilms on stainless-steel produced by two Shiga toxin-producing Escherichia coli (STEC) strains, one from South Africa and the other from Canada.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  18. A Rapid Enzyme-Linked Immunomagnetic Electrochemical (ELIME) Assay for the Detection of Escherichia coli O26 in Raw Milk

    • Food Analytical Methods
    • In this work, we present a magnetic bead–based immunosensorss for the determination of Escherichia coli O26 in milk. The assay uses commercial Dynabeads® for the capture of the target bacteria from 6-h enrichment broth and horseradish peroxidase–labelled polyclonal antibodies and detection of the peroxidase activity by chronoamperometry. Bovine seroalbumin was used as blocking reagent for reducing the binding of non-specific antibodies to the beads and/or other bacteria.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  19. Evaluation of Ultraviolet Light (UVC) and UVC-Ozone Combination as Fresh Beef Interventions against Shiga Toxin-Producing Escherichia coli (STEC), Salmonella, and Listeria monocytogenes and Their Effects on Beef Quality

    • Journal of Food Protection
    • This research study was based on ultraviolet (UVC) light and a combination of UVC-ozone treatments that have recently received attention from the beef processing industry as antimicrobial interventions that leave no chemical residues on products. The objectives were to evaluate effectiveness of UVC and UVC in combination with gaseous ozone treatments for inactivation of pathogenic bacteria on fresh beef and the impact on fresh beef quality.

      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Escherichia coli O157:H7
      • Listeria monocytogenes
  20. A Novel Tail-Associated O91-Specific Polysaccharide Depolymerase from a Podophage Reveals Lytic Efficacy of Shiga Toxin-Producing Escherichia coli

    • Applied and Environmental Microbiology
    • Shiga toxin-producing Escherichia coli (STEC) strains are important zoonotic foodborne pathogens, causing diarrhea, hemorrhagic colitis, and life-threatening hemolytic uremic syndrome (HUS) in humans. However, antibiotic treatment of STEC infection is associated with an increased risk of HUS. Therefore, there is an urgent need for early and effective therapeutic strategies.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  21. Survival of Shiga Toxin-Producing Escherichia coli (STEC) in Various Wild Animal Feces that May Contaminate Produce

    • Journal of Food Protection
    • Domestic and wild animal intrusions are identified as a food safety risk during fresh produce production. The purpose of this study was to evaluate the survival of Shiga toxin-producing Escherichia coli (STEC) in cattle, feral pig, waterfowl, deer, and raccoon feces from sources in California, Delaware, Florida, and Ohio. Fecal samples were inoculated with a cocktail of rifampicin resistant STEC (O103, O104, O111, O145, and O157 (104 to 106 CFU/g feces).

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  22. Antibody response to lipopolysaccharides and recombinant proteins of Shiga toxin (Stx) producing Escherichia coli (STEC) in children with hemolytic uremic syndrome in Poland

    • Letters in Applied Microbiology
    • Typical hemolytic uremic syndrome (STEC‐HUS), caused by Shiga toxin (Stx)‐producing Escherichia coli (STEC), is a serious, life‐threating disease that mainly affects children. Bacteriological and genetic tests are commonly used in the routine laboratory diagnosis of STEC‐HUS; however, serological methods have emerged as useful and reliable diagnostic tools, especially when bacterial isolation fails.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  23. Oral administration of lipopolysaccharides from Escherichia coli (serotype O111:B4) does not induce an effective systemic immune response in milk-fed Holstein calves

    • Journal of Dairy Science
    • It is well established that intravenous administration of lipopolysaccharides (LPS)—cell wall components from gram-negative bacteria—induce acute inflammatory responses in dairy calves, but the effect of oral administration of LPS to dairy calves is currently unknown.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  24. Robustness and efficacy of an inhibitory consortium against E. coli O26:H11 in raw milk cheeses

    • Food Control
    • Author(s): Marie Frétin, Christophe Chassard, Céline Delbès, René Lavigne, Etienne Rifa, Sébastien Theil, Benoit Fernandez, Patrice Laforce, Cécile Callon

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  25. Genetic Diversity of Non-O157 Shiga Toxin-Producing Escherichia coli Recovered From Patients in Michigan and Connecticut

    • Frontiers in Microbiology
    • Shiga toxin-producing Escherichia coli (STEC) are important foodborne pathogens and non-O157 serotypes have been gradually increasing in frequency. The non-O157 STEC population is diverse and is often characterized using serotyping and/or multilocus sequence typing (MLST). Although spacers within clustered regularly interspaced repeat (CRISPR) regions were shown to comprise horizontally acquired DNA elements, this region does not actively acquire spacers in STEC.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli