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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 276 - 300 of 429

  1. Combination of organic acids and low-dose gamma irradiation as antimicrobial treatment to inactivate Shiga toxin-producing Escherichia coli inoculated in beef trimmings: Lack of benefits in relation to single treatments

    • PLOS ONE
    • by Mariana Cap, Celeste Cingolani, Carla Lires, Marina Mozgovoj, Trinidad Soteras, Adriana Sucari, Jimena Gentiluomo, Adriana Descalzo, Gabriela Grigioni, Marcelo Signorini, Celina Horak, Sergio Vaudagna, Gerardo Leotta

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  2. Biofilm formation by South African non-O157 Shiga toxigenic Escherichia coli on stainless steel coupons

    • Canadian Journal of Microbiology
    • This study examined the biofilm-forming ability of six non-O157 Shiga-toxin-producing Escherichia coli (STEC) strains: O116:H21, wzx-Onovel5:H19, O129:H21, O129:H23, O26:H11, and O154:H10 on stainless steel coupons after 24, 48, and 72 h of incubation at 22 °C and after 168 h at 10 °C.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  3. Genome Sequences of Uncommon Shiga Toxin-Producing Escherichia coli Serotypes

    • Microbiology Resource Announcements
    • Shiga toxin-producing Escherichia coli (STEC) is a foodborne disease with worldwide outbreaks. STEC serotypes O157, O26, O45, O103, O111, O121, and O145 cause the most outbreaks. There is little published information regarding the other serotypes. We report the draft genome sequences for 11 uncommon STEC serotypes from Nebraska.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  4. Single-Cell-Based Digital PCR Detection and Association of Shiga Toxin-Producing Escherichia coli Serogroups and Major Virulence Genes

    • Journal of Clinical Microbiology
    • Escherichia coli serogroups O157, O26, O45, O103, O111, O121, and O145, when carrying major virulence genes, the Shiga toxin genes stx1 and stx2 and the intimin gene eae, are important foodborne pathogens. They are referred to as the "top 7" Shiga toxin-producing E. coli (STEC) serogroups and were declared by the USDA as adulterants to human health. Since top 7 serogroup-positive cattle feces and ground beef can also contain nonadulterant E.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  5. Genome-Based Analysis of Extended-Spectrum β-Lactamase-Producing Escherichia coli in the Aquatic Environment and Nile Perch (Lates niloticus) of Lake Victoria, Tanzania

    • Frontiers in Microbiology
    • Extended-spectrum β-lactamase (ESBL)-producing bacteria constitute an emerging global health issue with food products being vehicles of transmission and the aquatic environments serving as potential reservoirs. This study aimed to characterize ESBL-producing Escherichia coli in Nile perch and water from Lake Victoria in Tanzania. A total of 180 samples of Nile perch and 60 water samples were screened for ESBL-producing E.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  6. Using hydrochloric acid and bile resistance for optimized detection and isolation of Shiga toxin-producing Escherichia coli (STEC) from sprouts

    • International Journal of Food Microbiology
    • Author(s): Marina C. Lamparter, Annica Seemann, Carolin Hobe, Elisabeth Schuh

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  7. Carriage and Subtypes of Foodborne Pathogens Identified in Wild Birds Residing near Agricultural Lands in California: a Repeated Cross-Sectional Study

    • Applied and Environmental Microbiology
    • Current California agricultural practices strive to comanage food safety and habitat conservation on farmland. However, the ecology of foodborne pathogens in wild bird populations, especially those avian species residing in proximity to fresh produce production fields, is not fully understood. In this repeated cross-sectional study, avifauna within agricultural lands in California were sampled over 1 year.

      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  8. Escherichia coli ST302: Genomic Analysis of Virulence Potential and Antimicrobial Resistance Mediated by Mobile Genetic Elements

    • Frontiers in Microbiology
    • aEPEC are associated with persistent diarrhea, and diarrheal outbreaks in both humans and animals worldwide. They are differentiated from typical EPEC by the lack of bundle-forming pili, and from EHEC by the lack of phage-mediated stx toxins. However, phylogenetic analyses often associate aEPEC with EHEC, promoting the hypothesis that aEPEC are the progenitors of EHEC, which is supported by aEPEC conversion to EHEC by stx-carrying phages.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  9. Evaluation of Vacuum Steam Treatment of Hard Red Spring Wheat on flour quality and reduction of Escherichia coli O121 and Salmonella Enteritidis PT30

    • Journal of Food Protection
      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  10. Effect of pH on Survival of Escherichia coli O157, Escherichia coli O121, and Salmonella enterica during Desiccation and Short-Term Storage

    • Journal of Food Protection
      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  11. Transmission of antimicrobial resistant non-O157 Escherichia coli at the interface of animal-fresh produce in sustainable farming environments

    • International Journal of Food Microbiology
    • Author(s): Ayanna Glaize, Eduardo Gutierrez-Rodriguez, Irene Hanning, Sandra Díaz-Sánchez, Chris Gunter, Arnoud H.M. van Vliet, Wes Watson, Siddhartha Thakur

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  12. Comparable stx2a expression and phage production levels between Shiga toxin‐producing Escherichia coli strains from human and bovine origin

    • Zoonoses and Public Health
    • Shiga toxin‐producing Escherichia coli (STEC) can cause diarrhoea and severe diseases in humans, such as haemolytic uraemic syndrome. STEC virulence is considered to correlate with the amount of Shiga toxins (Stx) produced, especially Stx2, whose subtype Stx2a is most frequently associated with high virulence. Stx are encoded in prophages, which play an important role in STEC pathogenesis.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  13. Metabolic characterization of eight Escherichia coli strains and acidic responses of selected strains revealed by NMR spectroscopy

    • Food Microbiology
    • Author(s): Lin Chen, Xue Zhao, Ji'en Wu, Qin Liu, Xinyi Pang, Hongshun Yang

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  14. Genomic analysis of Shiga toxin-producing Escherichia coli from patients and asymptomatic food handlers in Japan

    • PLOS ONE
    • by Hiroaki Baba, Hajime Kanamori, Hayami Kudo, Yasutoshi Kuroki, Seiya Higashi, Kentaro Oka, Motomichi Takahashi, Makiko Yoshida, Kengo Oshima, Tetsuji Aoyagi, Koichi Tokuda, Mitsuo Kaku

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  15. Shiga toxin-producing Escherichia coli survives storage in wheat flour for two years

    • Food Microbiology
    • Author(s): Alexander Gill, Tanis McMahon, Forest Dussault, Nicholas Petronella

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  16. Comparison of survival and heat resistance of Escherichia coli O121 and Salmonella in muffins

    • International Journal of Food Microbiology
    • Author(s): Minto Michael, Jennifer Acuff, Keyla Lopez, Daniel Vega, Randall Phebus, Harshavardhan Thippareddi, Lakshmikantha H. Channaiah

      • Salmonella
      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  17. Occurrence of Campylobacter spp., Salmonella spp. and shiga toxin‐producing Escherichia coli in inline milk filters from Swedish dairy farms

    • Journal of Food Safety
    • This study investigated the occurrence of shiga toxin‐producing Escherichia coli (STEC), thermotolerant Campylobacter spp. and Salmonella spp. in Swedish dairy milk. A total of 302 inline milk filters were analyzed. Salmonella was not isolated from any filters. Polymerase chain reaction screening detected thermotolerant Campylobacter in 30.5% of the milk filters analyzed and it was isolated from 12.6% of filters.

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
      • Enterohemorrhagic Escherichia coli
  18. Shiga toxin-producing Escherichia coli (STEC) shedding in a wild roe deer population

    • Veterinary Microbiology
    • Author(s): E. Frank, R. Bonke, N. Drees, M. Heurich, E. Märtlbauer, M. Gareis

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  19. Shiga toxin‐producing Escherichia coli (STEC) in the animal reservoir and food in Brazil

    • Journal of Applied Microbiology
    • Shiga toxin‐producing Escherichia coli (STEC) is a zoonotic pathotype associated with human gastrointestinal disease that may progress to severe complications. Ruminants, especially cattle, are the main reservoirs of STEC from which they can contaminate the environment and foods of animal or vegetable origin. Besides Shiga toxin, other virulence factors are involved in STEC virulence. O157:H7 remains the most frequent serotype associated with disease.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  20. Shiga toxin-producing Escherichia coli isolates from red deer (Cervus elaphus), roe deer (Capreolus capreolus) and fallow deer (Dama dama) in Poland

    • Food Microbiology
    • Author(s): Anna Szczerba-Turek, Jan Siemionek, Piotr Socha, Agata Bancerz-Kisiel, Aleksandra Platt-Samoraj, Karolina Lipczynska-Ilczuk, Wojciech Szweda

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Escherichia coli O157:H7
  21. Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada

    • Microbiology Resource Announcements
    • We report high-quality closed reference genomes for 1 bovine strain and 10 human Shiga toxin (Stx)-producing Escherichia coli (STEC) strains from serogroups O26, O45, O91, O103, O104, O111, O113, O121, O145, and O157. We also report draft assemblies, with standardized metadata, for 360 STEC strains isolated from watersheds, animals, farms, food, and human infections.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  22. Complete Genome Sequence of an Enterohemorrhagic Escherichia coli O111:H8 Strain Recovered from a Large Outbreak in Japan Associated with Consumption of Raw Beef

    • Microbiology Resource Announcements
    • We present the complete genome sequence of an enterohemorrhagic Escherichia coli O111:H8 strain. This strain was isolated from a hemolytic-uremic syndrome patient and was responsible for a large outbreak associated with the consumption of raw beef in 2011.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  23. Transcription of the Subtilase Cytotoxin Gene subAB1 in Shiga Toxin-Producing Escherichia coli Is Dependent on hfq and hns

    • Applied and Environmental Microbiology
    • Certain foodborne Shiga toxin-producing Escherichia coli (STEC) strains carry genes encoding the subtilase cytotoxin (SubAB). Although the mode of action of SubAB is under intensive investigation, information about the regulation of subAB gene expression is currently not available. In this study, we investigated the regulation of the chromosomal subAB1 gene in laboratory E. coli strain DH5α and STEC O113:H21 strain TS18/08 using a luciferase reporter gene assay.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  24. Characterization of a Lytic Bacteriophage as an Antimicrobial Agent for Biocontrol of Shiga Toxin-Producing Escherichia coli O145 Strains

    • Antibiotics
    • Shiga toxin-producing Escherichia coli (STEC) O145 is one of the most prevalent non-O157 serogroups associated with foodborne outbreaks. Lytic phages are a potential alternative to antibiotics in combatting bacterial pathogens. In this study, we characterized a Siphoviridae phage lytic against STEC O145 strains as a novel antimicrobial agent. Escherichia phage vB_EcoS-Ro145clw (Ro145clw) was isolated and purified prior to physiological and genomic characterization.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  25. A quantitative real time PCR assay to detect and enumerate Escherichia coli O157 and O26 serogroups in sheep recto-anal swabs

    • Journal of Microbiological Methods
    • Author(s): Guerrino Macori, Siobhán C. McCarthy, Catherine M. Burgess, Séamus Fanning, Geraldine Duffy

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens