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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 16 of 16

  1. Enteric Illness Outbreaks Reported Through the National Outbreak Reporting System—United States, 2009–2019

    • Clinical Infectious Diseases
    • Background The National Outbreak Reporting System (NORS) captures data on foodborne, waterborne, and enteric illness outbreaks in the United States. This study describes enteric illness outbreaks reported during 11 years of surveillance. Methods We extracted finalized reports from NORS for outbreaks occurring during 2009–2019.

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
      • Shigella
      • Viruses
      • Norovirus
  2. Azithromycin and Ciprofloxacin Treatment Outcomes During an Outbreak of Multidrug-Resistant Shigella sonnei Infections in a Retirement Community—Vermont, 2018

    • Clinical Infectious Diseases
    • Background In 2018, the Centers for Disease Control and Prevention and the Vermont Department of Health investigated an outbreak of multidrug-resistant Shigella sonnei infections in a retirement community that offered a continuum of care from independent living through skilled nursing care. The investigation identified 24 culture-confirmed cases.

      • Bacterial pathogens
      • Shigella
  3. Incidence, Etiology, and Severity of Acute Gastroenteritis Among Prospectively Enrolled Patients in 4 Veterans Affairs Hospitals and Outpatient Centers, 2016–2018

    • Clinical Infectious Diseases
    • Background Acute gastroenteritis (AGE) burden, etiology, and severity in adults is not well characterized. We implemented a multisite AGE surveillance platform in 4 Veterans Affairs Medical Centers (Atlanta, Georgia; Bronx, New York; Houston, Texas; and Los Angeles, California), collectively serving >320 000 patients annually.

      • Norovirus
      • Shigella
      • Bacterial pathogens
      • Viruses
  4. The Clinical Presentation of Culture-positive and Culture-negative, Quantitative Polymerase Chain Reaction (qPCR)-Attributable Shigellosis in the Global Enteric Multicenter Study and Derivation of a Shigella Severity Score: Implications for Pediatric...

    • Clinical Infectious Diseases
    • Background Shigella is a leading cause of childhood diarrhea and target for vaccine development. Microbiologic and clinical case definitions are needed for pediatric field vaccine efficacy trials.

      • Shigella
      • Bacterial pathogens
  5. Diarrheal Pathogens Associated With Growth and Neurodevelopment

    • Clinical Infectious Diseases
    • Background Diarrheal pathogens have been associated with linear growth deficits. The effect of diarrheal pathogens on growth is likely due to inflammation, which also adversely affects neurodevelopment. We hypothesized that diarrheagenic pathogens would be negatively associated with both growth and neurodevelopment.

      • Campylobacter
      • Norovirus
      • Shigella
      • Bacterial pathogens
      • Viruses
  6. Lewis Blood-group Antigens Are Associated With Altered Susceptibility to Shigellosis

    • Clinical Infectious Diseases
    • In a cohort of infants, we found that lack of the Lewis histo-blood group antigen was associated with increased susceptibility to shigellosis. Broadly inhibiting fucosylation in epithelial cells in vitro decreased invasion by Shigella flexneri. These results support a role for fucosylated glycans in susceptibility to shigellosis.

      • Shigella
      • Bacterial pathogens
  7. Duration of Postdiarrheal Enteric Pathogen Carriage in Young Children in Low-resource Settings

    • Clinical Infectious Diseases
    • Background Prolonged enteropathogen shedding after diarrhea complicates the identification of etiology in subsequent episodes and is an important driver of pathogen transmission. A standardized approach has not been applied to estimate the duration of shedding for a wide range of pathogens.

      • Shigella
      • Cryptosporidium parvum
      • Bacterial pathogens
      • Parasites
  8. Clinical Outcomes of Drug-resistant Shigellosis Treated With Azithromycin in Bangladesh

    • Clinical Infectious Diseases
    • Background Azithromycin is frequently used to treat shigellosis; however, clinical outcomes are uncertain. Methods We performed an observational cohort study in Bangladesh of patients with invasive diarrhea treated empirically with azithromycin. Susceptibility testing was performed by broth microdilution and disk diffusion post hoc on all Shigella isolates and clinical response was correlated with in vitro susceptibility.

      • Shigella
      • Bacterial pathogens
  9. International Spread of Multidrug-Resistant Campylobacter coli in Men Who Have Sex With Men in Washington State and Québec, 2015–2018

    • Clinical Infectious Diseases
    • Background Campylobacter species are among the most common causes of enteric bacterial infections worldwide. Men who have sex with men (MSM) are at increased risk for sexually transmitted enteric infections, including globally distributed strains of multidrug-resistant Shigella species.

      • Campylobacter
      • Shigella
      • Bacterial pathogens
  10. Extended-spectrum β-Lactamase Acquisition in Patients Receiving Systemic Cephalosporin Treatment for Salmonella spp. and Shigella spp. Infection

    • Clinical Infectious Diseases
    • To the Editor—Salmonella spp. and Shigella spp. are major gastrointestinal pathogens. Although extended-spectrum β-lactamase (ESBL)–mediated resistance to cephalosporins is common in Escherichia coli [1], it remains rare in infections with enteric pathogens. Consequently, current recommendations for treating these infections include cephalosporins [2]. Here we report 3 cases of ESBL emergence within 6–49 days after cephalosporin therapy.

      • Salmonella
      • Shigella
      • Bacterial pathogens
  11. Consensus Report on Shigella Controlled Human Infection Model: Introduction and Overview

    • Clinical Infectious Diseases
    • In recent years, controlled human infection models (CHIMs) have become available for a range of infectious agents and have proved invaluable for understanding the disease process, pathogenesis, and mechanisms of immunity. CHIM studies have also contributed significantly to advancing development of a number of vaccines by providing an indication of vaccine efficacy.

      • Bacterial pathogens
      • Shigella
  12. Consensus Report on Shigella Controlled Human Infection Model: Clinical Endpoints

    • Clinical Infectious Diseases
    • The Shigella controlled human infection model (CHIM) is valuable for assessing candidate Shigella vaccine efficacy and potentially accelerating regulatory approval. The Shigella CHIM is currently being conducted at 3 sites in the United States using Shigella flexneri 2a strain 2457T and Shigella sonnei strain 53G. Shigellosis can present variably as watery diarrhea alone or with dysentery, and can be accompanied by manifestations including fever, abdominal cramps, tenesmus, and malaise.

      • Bacterial pathogens
      • Shigella
  13. Consensus Report on Shigella Controlled Human Infection Model: Immunological Assays

    • Clinical Infectious Diseases
    • Moderate to severe diarrhea caused by Shigella is a global health concern due to its substantial contribution to morbidity and mortality in children aged <5 years in low- and middle-income countries. Although antibiotic treatment can be effective, emerging antimicrobial resistance, limited access, and cost affirm the role of vaccines as the most attractive countermeasure.

      • Bacterial pathogens
      • Shigella
  14. Consensus Report on Shigella Controlled Human Infection Model: Conduct of Studies

    • Clinical Infectious Diseases
    • Shigella causes morbidity and mortality worldwide, primarily affecting young children living in low-resource settings. It is also of great concern due to increasing antibiotic resistance, and is a priority organism for the World Health Organization. A Shigella vaccine would decrease the morbidity and mortality associated with shigellosis, improve child health, and decrease the need for antibiotics.

      • Bacterial pathogens
      • Shigella
  15. Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia

    • Clinical Infectious Diseases
    • Background In urban Australia, the burden of shigellosis is either in returning travelers from shigellosis-endemic regions or in men who have sex with men (MSM). Here, we combine genomic data with comprehensive epidemiological data on sexual exposure and travel to describe the spread of multidrug-resistant Shigella lineages.

      • Bacterial pathogens
      • Shigella
  16. Performance of Stool-testing Recommendations for Acute Gastroenteritis When Used to Identify Children With 9 Potential Bacterial Enteropathogens

    • Clinical Infectious Diseases
    • Background The ability to identify bacterial pathogens that necessitate specific clinical management or public health action in children with acute gastroenteritis is crucial to patient care and public health. However, existing stool-testing guidelines offer inconsistent recommendations, and their performance characteristics are unknown.

      • Vibrio
      • Campylobacter
      • Bacterial pathogens
      • Salmonella
      • Shigella