An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 301 - 325 of 630

  1. A Novel sRNA in Shigella flexneri That Regulates Tolerance and Virulence Under Hyperosmotic Pressure

    • Frontiers in Cellular and Infection Microbiology
    • Regulation of the environmental stress response and virulence of Shigella flexneri may involve multiple signaling pathways; however, these mechanisms are not well-defined. In bacteria, small regulatory RNAs (sRNAs) regulate bacterial growth, metabolism, virulence, and environmental stress response. Therefore, identifying novel functional sRNAs in S. flexneri could help elucidate pathogenic adaptations to host micro-environmental stresses and associated virulence.

      • Bacterial pathogens
      • Shigella
  2. Differential expression of cytokine genes in THP-1-derived macrophages infected with mild and virulence strains of Shigella flexneri 2a

    • Infection, Genetics and Evolution
    • Author(s): Nor Raihan Mohammad Shabani, Munirah Mokhtar, Chiuan Herng Leow, Qi Ying Lean, Candy Chuah, Kirnpal Kaur Banga Singh, Chiuan Yee Leow

      • Shigella
      • Bacterial pathogens
  3. The in vitro Effects of the Probiotic Strain, Lactobacillus casei ZX633 on Gut Microbiota Composition in Infants With Diarrhea

    • Frontiers in Cellular and Infection Microbiology
    • We investigated the in vitro effects of Lactobacillus casei ZX633 on gut microorganism composition in infants with diarrhea. For this purpose, 103 feces samples from healthy infants (healthy group) and 300 diarrhea samples from infants (diarrhea group) were collected, and diarrhea feces were treated with L. casei ZX633, which was previously isolated from healthy infant feces (treatment group).

      • Bacterial pathogens
      • Shigella
  4. Characterization of gut microbiota and short‐chain fatty acid in breastfed infants with or without breast milk jaundice

    • Letters in Applied Microbiology
    • This study aims to investigate the gut microbiota and metabolites in breastfed infants with breast milk jaundice (BMJ) using gut microbiome‐metabolomics. Breastfed newborns diagnosed with BMJ and those without BMJ (control group) were enrolled. Fecal samples were collected from the participants and subjected to high‐throughput sequencing of the 16s rDNA V3 and V4 regions of the gut flora and metabolomics of short‐chain fatty acids (SCFAs).

      • Bacterial pathogens
      • Shigella
  5. Newly Emerged Serotype 1c of Shigella flexneri: Multiple Origins and Changing Drug Resistance Landscape

    • Genes
    • Bacillary dysentery caused by Shigella flexneri is a major cause of under-five mortality in developing countries, where a novel S. flexneri serotype 1c has become very common since the 1980s. However, the origin and diversification of serotype 1c remain poorly understood.

      • Bacterial pathogens
      • Shigella
  6. Effect of some fermentation conditions on antibacterial activity of fermented milk by kefir grains

    • Journal of Food Processing and Preservation
    • The present study aimed to investigate the effect of type of milk, fermentation time, temperature, and stirring conditions on the antibacterial activity of fermented milk by kefir grains. All fermentation conditions had a significant effect on the antibacterial activity of kefir samples against four bacteria, except for the effect of temperature on the diameter of the inhibition zone of Shigella dysenteriae.

      • Staphylococcus aureus
      • Bacillus cereus
      • Shigella
      • Bacterial pathogens
  7. Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape

    • PLOS Pathogens
    • by Yuen-Yan Chang, Virginie Stévenin, Magalie Duchateau, Quentin Giai Gianetto, Veronique Hourdel, Cristina Dias Rodrigues, Mariette Matondo, Norbert Reiling, Jost Enninga

      • Shigella
      • Bacterial pathogens
  8. Optimization conditions for the prolonged storage of fermented pork jerky using Lactobacillus bulgaricus as a starter culture

    • Journal of Food Processing and Preservation
    • This study optimized storage conditions for fermented pork jerky via microbial fermentation. Lactobacillus bulogaricus was employed as starter culture, fermentation conditions and baking conditions were optimized in study. Microbial indices reflecting parameters of preserved fermented pork jerky involved the detection of total plate count, Escherichia coli, Salmonella, Staphylococcus aureus and Shigella.

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Staphylococcus aureus
  9. Ultrasound and malic acid treatment of sweet lemon juice: Microbial inactivation and quality changes

    • Journal of Food Processing and Preservation
    • The objective of this study was to compare the impact of ultrasound (US; 30 kHz; 2, 4, 6, and 8 min) and malic acid (MA; 0.5 and 1%), individually and in combination, on inactivation of food borne pathogens (Salmonella Typhi, Shigella dysenteriae, Listeria monocytogenes and Shigella flexneri) and the effect of US treatment on β‐carotene and total phenolics content in sweet lemon juice.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Salmonella
      • Shigella
  10. Shigella infection and host cell death: a double-edged sword for the host and pathogen survival

    • Current Opinion in Microbiology
    • Author(s): Hiroshi Ashida, Toshihiko Suzuki, Chihiro Sasakawa

      • Shigella
      • Bacterial pathogens
  11. High-Fat Diet Induced Alteration of Mice Microbiota and the Functional Ability to Utilize Fructooligosaccharide for Ethanol Production

    • Frontiers in Cellular and Infection Microbiology
    • High-fat diet (HFD) leads to enhancement in various parameters of mice like weight, fasting glucose levels, adipose tissue, and also the liver weight in male C57 BL/6 J mice. Additionally, high-fat diet causes severe liver damage with significant increase in the level of aspartate amino transferase (AST) and alanine transaminase (ALT).

      • Shigella
      • Bacterial pathogens
  12. Invasion of Epithelial Cells Is Correlated with Secretion of Biosurfactant via the Type 3 Secretion System (T3SS) of Shigella flexneri

    • Journal of Pathogens
    • Biosurfactants are amphipathic molecules produced by many microorganisms, usually bacteria, fungi, and yeasts. They possess the property of reducing the tension of the membrane interfaces. No studies have been conducted on Shigella species showing the role of biosurfactant-like molecules (BLM) in pathogenicity. The aim of this study is to assess the ability of Shigella environmental and clinical strains to produce BLM and investigate the involvement of biosurfactants in pathogenicity.

      • Bacterial pathogens
      • Shigella
  13. Rapid and miniaturized method for detection of hygiene indicators, Escherichia coli and coliforms, in dairy products

    • Journal of Food Safety
    • The developed miniaturized test (s) rapidly detects Escherichia coli/coliforms colorimetrically utilizing specific enzyme substrates and selective agents incorporated in media. High sensitivity and selectivity for target bacteria. A total of 139 milk samples were tested for presence of E.coli/coliforms using developed test (s). Abstract Current investigation was aimed to develop colorimetric tests for rapid detection of Escherichia coli/coliforms. These test (s) for E.

      • Bacterial pathogens
      • Salmonella
      • Shigella
  14. Feeding Bugs to Bugs: Edible Insects Modify the Human Gut Microbiome in an in vitro Fermentation Model

    • Frontiers in Microbiology
    • We here report a study characterizing the potential for edible insects to act as a prebiotic by altering the bacterial composition of the human fecal microbiome, using batch cultures inoculated with fecal adult human donors. Black field cricket nymphs, grass grub larvae, and wax moth larvae were subjected to an in vitro digestion to simulate the oral, gastric, and small intestinal stages of digestion.

      • Bacterial pathogens
      • Shigella
  15. Antibiofilm Activity of Lactobacillus plantarum 12 Exopolysaccharides against Shigella flexneri

    • Applied and Environmental Microbiology
    • In developing countries, Shigella flexneri is the most common enteric pathogen causing bacillary dysentery. Biofilm formation by S. flexneri can cause the emergence of antibiotic-resistant strains, which poses serious threats to food safety and human health. In this study, the effects of Lactobacillus plantarum 12 exopolysaccharides (L-EPSs) and S. flexneri exopolysaccharides (S-EPSs) on S. flexneri CMCC51574 biofilm formation were investigated.

      • Shigella
      • Bacterial pathogens
  16. Phylogenetic Characterization Reveals Prevalent Shigella flexneri ST100 Clone in Beijing, China, 2005 to 2018

    • mSphere
    • ABSTRACT

      • Bacterial pathogens
      • Shigella
  17. Molecular Mechanisms of Intercellular Dissemination of Bacterial Pathogens

    • Trends in Microbiology
    • Several intracellular bacterial pathogens, including Listeria monocytogenes, Shigella flexerni, and Rickettsia spp. use an actin-based motility process to spread in mammalian cell monolayers. Cell-to-cell spread is mediated by protrusive structures that contain bacteria encased in the host cell plasma membrane. These protrusions, which form in infected host cells, are internalized by neighboring cells.

      • Listeria monocytogenes
      • Shigella
      • Bacterial pathogens
  18. Dietary Methionine Restriction Ameliorated Fat Accumulation, Systemic Inflammation, and Increased Energy Metabolism by Altering Gut Microbiota in Middle-Aged Mice Administered Different Fat Diets

    • Journal of Agricultural and Food Chemistry
    • Diet greatly influences gut microbiota. Dietary methionine restriction (MR) prevents and ameliorates age-related or high-fat-induced diseases and prolongs life span. This study aimed to reveal the impact of MR on gut microbiota in middle-aged mice with low-, medium-, high-fat diets. C57BL/6J mice were randomly divided into six groups with different MR and fat-content diets. Multiple indicators of intestinal function, fat accumulation, energy consumption, and inflammation were measured.

      • Vibrio
      • Bacterial pathogens
      • Shigella
  19. Antibiotic Administration Routes and Oral Exposure to Antibiotic Resistant Bacteria as Key Drivers for Gut Microbiota Disruption and Resistome in Poultry

    • Frontiers in Microbiology
    • Previous studies have identified oral administration of antibiotics and gut-impacting drugs as critical drivers for fecal antibiotic resistance (AR) and microbiome disruption in lab mice, but the practical implications of these findings have yet to be validated in hosts nurtured in conventional environment.

      • Shigella
      • Bacterial pathogens
  20. Prevalence of Plasmid-Mediated Determinants With Decreased Susceptibility to Azithromycin Among Shigella Isolates in Anhui, China

    • Frontiers in Microbiology
    • Objective

      The aims of this study were to describe azithromycin (AZM) susceptibility patterns among Shigella isolates in Anhui, China and identify predictors of resistance with mobile element-mediated genes.

      Methods

      • Shigella
      • Bacterial pathogens
  21. A Rapidly Evolving Polybasic Motif Modulates Bacterial Detection by Guanylate Binding Proteins

    • mBio
    • ABSTRACT

      • Shigella
      • Bacterial pathogens
  22. Ferulic Acid Inactivates Shigella flexneri through Cell Membrane Destructieon, Biofilm Retardation, and Altered Gene Expression

    • Journal of Agricultural and Food Chemistry
    • Antibiotic resistance and capacity for biofilm formation of Shigella flexneri render previous prevention and control strategies minimally effective. Ferulic acid (FA) has been demonstrated to be useful due to its application in foods as an alternative natural preservative. However, information regarding the S. flexneri phenotype and molecular responses to FA exposure is limited. The present study investigated the effects of FA on S. flexneri planktonic growth and biofilm formation.

      • Bacterial pathogens
      • Shigella
  23. Early-life lactoferrin intervention modulates the colonic microbiota, colonic microbial metabolites and intestinal function in suckling piglets

    • Applied Microbiology and Biotechnology
    • This study reports the effects of early-life lactoferrin (LF) intervention on the colonic microbiota, intestinal function and mucosal immunity in suckling piglets. A total of 60 Duroc × Landrace × Yorkshire suckling piglets from six sows were assigned to the control (CON) and LF groups in litters. The LF group piglets were fed 0.5 g/kg body weight of LF solution per day, and the CON group piglets were fed the same dose of physiological saline for a week.

      • Shigella
      • Bacterial pathogens
  24. Synergistic properties of Eucalyptus caesia and Dracocephalum multicaule Montbr & Auch essential oils: Antimicrobial activity against food borne pathogens and antioxidant activity in pear slices

    • Journal of Food Processing and Preservation
    • The objective of this study was to evaluate the possible synergistic interactions on antibacterial and antioxidant efficacy of two plant essential oils (EOs) Eucalyptus caesia Benth and Dracocephalum multicaule Montbr & Auch in vitro and in pear slices.

      • Listeria monocytogenes
      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
      • Bacillus cereus
  25. Detecting Foodborne Disease Outbreaks in Florida Through Consumer Complaints

    • Journal of Food Protection
    • The Florida Complaint and Outbreak Reporting System (FL-CORS) database is used by the Florida Department of Health’s Food and Waterborne Disease Program (FWDP) as one of the tools to detect foodborne disease outbreaks. We present a descriptive and spatial network analysis of the FL-CORS data collected during 2015-2018.

      • Clostridium perfringens
      • Norovirus
      • Salmonella
      • Shigella
      • Vibrio
      • Cryptosporidium parvum
      • Bacterial pathogens
      • Parasites
      • Viruses