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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 426 - 450 of 628

  1. Modeling inactivation of Listeria monocytogenes, Shigella sonnei, Byssochlamys fulva and Saccharomyces cerevisiae and ascorbic acid and β-carotene degradation kinetics in tangerine juice by pulsed-thermosonication

    • LWT
    • Publication date: Available online 13 May 2019

      Source: LWT

      Author(s): Seyed Mohammad Bagher Hashemi, Reza Roohi, Mohammad Reza Mahmoudi, Daniel Granato

      • Listeria monocytogenes
      • Shigella
      • Bacterial pathogens
  2. Precise, direct, and rapid detection of Shigella Spa gene by a novel unmodified AuNPs-based optical genosensing system

    • Journal of Microbiological Methods
    • Available online 15 May 2019

      Author(s): Narges Elahi, Mohammad Hadi Baghersad, Mehdi Kamali

      • Shigella
      • Bacterial pathogens
  3. Gut Microbiota of Newborn Piglets with Intrauterine Growth Restriction have Lower Diversity and Different Taxonomic Abundances

    • Journal of Applied Microbiology
    • Abstract

      Aim

      Intrauterine growth retardation (IUGR) is a prevalent problem in mammals. The present study was conducted to unveil the alterations in intestinal microbiota in IUGR piglets.

      • Shigella
      • Bacterial pathogens
  4. Evaluation of the GeneFields® EHEC/SS PCR dipstick DNA chromatography kit for the detection of enteric bacterial pathogens in stool specimens of healthy humans

    • Journal of Microbiological Methods
    • Available online 2 May 2019

      Author(s): Hiroki Maruoka, Atsushi Hinenoya, Noritomo Yasuda, Atsuyoshi Takeda, Shin Inoue, Tomoko Sumi, Kazuaki Koitabashi, Hiroshi Yasue, Kazuhiko Kogou, Shinji Yamasaki

      • Shigella
      • Bacterial pathogens
  5. Evaluation of denaturing gradient gel electrophoresis (DGGE) and next generation sequencing (NGS) in combination with enrichment culture techniques to identify bacteria in commercial microbial-based products

    • Journal of Microbiological Methods
    • Available online 30 April 2019

      Author(s): R.M. Subasinghe, A.D. Samarajeewa, R. Scroggins, L.A. Beaudette

      • Shigella
      • Bacterial pathogens
  6. Plasmids of Shigella flexneri serotype 1c strain Y394 provide advantages to bacteria in the host

    • BMC Microbiology
    • Shigella flexneri has an extremely complex genome with a significant number of virulence traits acquired by mobile genetic elements including bacteriophages and plasmids. S. flexneri serotype 1c is an emerging et...

      • Shigella
      • Bacterial pathogens
  7. Contamination of yellow-feathered broiler carcasses: Microbial diversity and succession during processing

    • Food Microbiology
    • Available online 20 April 2019

      Author(s): Hang Wang, Xiaojie Qin, Si Mi, Xia Li, Xiaoling Wang, Weijiang Yan, Chunhui Zhang

      • Shigella
      • Bacterial pathogens
  8. Correlating Infant Faecal Microbiota Composition and Human Milk Oligosaccharide Consumption by Microbiota of One‐Month Old Breastfed Infants

    • Molecular Nutrition & Food Research
    • Scope

      Understanding biological functions of different free human milk oligosaccharides (HMOs) in shaping gastrointestinal tract microbiota during infancy is of great interest. We examined a link between HMOs in maternal milk and infant faecal microbiota composition and investigated the role of microbiota in degrading HMOs within the GI tract of healthy, breastfed, one‐month old infants.

      • Bacterial pathogens
      • Shigella
  9. Structural and Proteomic Changes in Viable but Non-culturable Vibrio cholerae

    • Frontiers in Microbiology
    • Aquatic environments are reservoirs of the human pathogen Vibrio cholerae O1, which causes the acute diarrheal disease cholera. Upon low temperature or limited nutrient availability, the cells enter a viable but non-culturable (VBNC) state. Characteristic of this state are an altered morphology, low metabolic activity, and lack of growth under standard laboratory conditions. Here, for the first time, the cellular ultrastructure of V.

      • Campylobacter
      • Shigella
      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  10. Campylobacter jejuni Demonstrates Conserved Proteomic and Transcriptomic Responses When Co-cultured With Human INT 407 and Caco-2 Epithelial Cells

    • Frontiers in Microbiology
    • Major foodborne bacterial pathogens, such as Campylobacter jejuni, have devised complex strategies to establish and foster intestinal infections. For more than two decades, researchers have used immortalized cell lines derived from human intestinal tissue to dissect C. jejuni-host cell interactions. Known from these studies is that C. jejuni virulence is multifactorial, requiring a coordinated response to produce virulence factors that facilitate host cell interactions.

      • Antibiotic residues
      • Campylobacter
      • Shigella
      • Bacterial pathogens
      • Chemical contaminants
  11. O-Antigen Gene Clusters of Plesiomonas shigelloides Serogroups and Its Application in Development of a Molecular Serotyping Scheme

    • Frontiers in Microbiology
    • Plesiomonas shigelloides is a Gram-negative, flagellated, rod-shaped, ubiquitous, and facultative anaerobic bacterium. It has been isolated from various sources, such as freshwater, surface water, and many wild and domestic animals. P. shigelloides is associated with diarrheal diseases of acute secretory gastroenteritis, an invasive shigellosis-like disease, and a cholera-like illness in humans. At present, 102 somatic antigens and 51 flagellar antigens of P.

      • Antibiotic residues
      • Yersinia
      • Shigella
      • Vibrio
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Chemical contaminants
  12. Toxins, Vol. 11, Pages 212: Roles of Shiga Toxins in Immunopathology

    • Toxins
    • Toxins, Vol. 11, Pages 212: Roles of Shiga Toxins in Immunopathology

      Toxins doi: 10.3390/toxins11040212

      Authors:
      Moo-Seung Lee
      Vernon L. Tesh

      • Shigella
      • Bacterial pathogens
  13. Gamma Irradiation Influences the Survival and Regrowth of Antibiotic-Resistant Bacteria and Antibiotic-Resistance Genes on Romaine Lettuce

    • Frontiers in Microbiology
    • Contamination of romaine lettuce with human pathogens, antibiotic-resistant bacteria (ARB), and antibiotic resistance genes (ARGs) occurs during production. Post-harvest interventions are emplaced to mitigate pathogens, but could also mitigate ARB and ARGs on vegetables. The objective of this research was to determine changes to lettuce phyllosphere microbiota, inoculated ARB, and the resistome (profile of ARGs) following washing with a sanitizer, gamma irradiation, and cold storage.

      • Escherichia coli O157:H7
      • Listeria monocytogenes
      • Yersinia
      • Shigella
      • Toxoplasma gondii
      • Bacterial pathogens
      • Parasites
  14. Feeding modes shape the acquisition and structure of the initial gut microbiota in newborn lambs

    • Environmental Microbiology
    • Summary

      • Bacterial pathogens
      • Shigella
      • Bacterial pathogens
      • Shigella
  15. Establishment of a method for the simultaneous detection of four foodborne pathogens using high‐throughput suspension array xTAG technology

    • International Journal of Food Science & Technology
    • International Journal of Food Science & Technology Establishment of a method for the simultaneous detection of four foodborne pathogens using high‐throughput suspension array xTAG technology

      • Bacillus cereus
      • Shigella
      • Bacterial pathogens
  16. PCR-Based Method for Shigella flexneri Serotyping: International Multicenter Validation [Bacteriology]

    • Journal of Clinical Microbiology
    • Shigella spp. are a leading cause of human diarrheal disease worldwide, with Shigella flexneri being the most frequently isolated species in developing countries. This serogroup is presently classified into 19 serotypes worldwide. We report here a multicenter validation of a multiplex-PCR-based strategy previously developed by Q. Sun, R. Lan, Y. Wang, A. Zhao, et al. (J Clin Microbiol 49:3766–3770, 2011) for molecular serotyping of S. flexneri.

      • Shigella
      • Bacterial pathogens
  17. Evaluation of Shigella Species Azithromycin CLSI Epidemiological Cutoff Values and Macrolide Resistance Genes [Bacteriology]

    • Journal of Clinical Microbiology
    • Azithromycin (AZM) has been recommended by the American Academy of Pediatrics for the treatment of shigellosis in children. In this study, 502 Shigella species isolated between 2004 and 2014 were tested for AZM epidemiological cutoff values (ECV) by disk diffusion.

      • Shigella
      • Bacterial pathogens
  18. Evaluating Shigella flexneri Pathogenesis in the Human Enteroid Model [Bacterial Infections]

    • Infection and Immunity
    • The enteric pathogen Shigella is one of the leading causes of moderate-to-severe diarrhea and death in young children in developing countries. Transformed cell lines and animal models have been widely used to study Shigella pathogenesis. In addition to altered physiology, transformed cell lines are composed of a single cell type that does not sufficiently represent the complex multicellular environment of the human colon. Most available animal models do not accurately mimic human disease.

      • Shigella
      • Bacterial pathogens
  19. Human Intestinal Enteroids as a Model System of Shigella Pathogenesis [Cellular Microbiology: Pathogen-Host Cell Molecular Interactions]

    • Infection and Immunity
    • The enteric bacterium and intracellular human pathogen Shigella causes hundreds of millions of cases of the diarrheal disease shigellosis per year worldwide. Shigella is acquired by ingestion of contaminated food or water; upon reaching the colon, the bacteria invade colonic epithelial cells, replicate intracellularly, spread to adjacent cells, and provoke an intense inflammatory response.

      • Shigella
      • Bacterial pathogens
  20. In Silico Serotyping Based on Whole-Genome Sequencing Improves the Accuracy of Shigella Identification [Public and Environmental Health Microbiology]

    • Applied and Environmental Microbiology
    • Bacteria of the genus Shigella, consisting of 4 species and >50 serotypes, cause shigellosis, a foodborne disease of significant morbidity, mortality, and economic loss worldwide. Classical Shigella identification based on selective media and serology is tedious, time-consuming, expensive, and not always accurate. A molecular diagnostic assay does not distinguish Shigella at the species level or from enteroinvasive Escherichia coli (EIEC).

      • Shigella
      • Bacterial pathogens
  21. Rapid and reasonable molecular identification of bacteria and fungi in microbiological diagnostics using rapid real-time PCR and Sanger sequencing

    • Journal of Microbiological Methods
    • Available online 9 March 2019

      Author(s): Reinhard Sting, Tobias Eisenberg, Maja Hrubenja

      • Yersinia
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  22. Rapid and Simple Universal Escherichia coli Genotyping Method Based on Multiple-Locus Variable-Number Tandem-Repeat Analysis Using Single-Tube Multiplex PCR and Standard Gel Electrophoresis [Methods]

    • Applied and Environmental Microbiology
    • We developed a multiplex PCR method based on multiple-locus variable-number tandem-repeat (VNTR) analysis (MLVA) that was designed for the rapid typing of Escherichia coli and Shigella isolates. The method amplifies seven VNTRs and does not require a sequencing capillary or fluorescent dyes. The amplification products are simply loaded on a standard agarose gel for electrophoresis, and the banding patterns are analyzed visually.

      • Shigella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  23. Amelioration of Growth Performance, Lipid Accumulation and Intestinal Health in Mice by a Cooked Mixture of Lean Meat and Resistant Starch

    • Molecular Nutrition & Food Research
    • Abstract

      Scope

      : The intake of resistant starch (RS) may attenuate the risks of chronic illness, including colorectal cancer. However, whether the attenuated functionality of RS is maintained in cooked meat products needs to be clarified.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  24. The prophages of Citrobacter rodentium represent a conserved family of horizontally-acquired mobile genetic elements associated with enteric evolution towards p

    • Journal of Bacteriology
    • Prophage mediated horizontal gene transfer (HGT) plays a key role in the evolution of bacteria, enabling access to new environmental niches, including pathogenicity. Citrobacter rodentium is a host-adapted intestinal mouse pathogen and important model organism for attaching and effacing (A/E) pathogens including the clinically significant enterohaemorrhagic (EHEC) and enteropathogenic (EPEC) Escherichia coli.

      • Shigella
      • Bacterial pathogens
  25. An Outbreak of Gastroenteritis Associated with GII.17 Norovirus -Contaminated Secondary Water Supply System in Wuhan, China, 2017

    • Food and Environmental Virology
    • Abstract

      • Vibrio
      • Bacterial pathogens
      • Viruses
      • Bacillus cereus
      • Norovirus
      • Shigella