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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 176 - 200 of 620

  1. Multivariate Analysis in Microbiome Description: Correlation of Human Gut Protein Degraders, Metabolites, and Predicted Metabolic Functions

    • Frontiers in Microbiology
    • Protein catabolism by intestinal bacteria is infamous for releasing many harmful compounds, negatively affecting the health status, both locally and systemically. In a previous study, we enriched in protein degraders the fecal microbiota of five subjects, utilizing a medium containing protein and peptides as sole fermentable substrates and we monitored their evolution by 16S rRNA gene profiling.

      • Shigella
      • Bacterial pathogens
  2. Effect of the Histone Methyltransferase Specific Probe BRD4770 on Metabolic Profiling of the Endophytic Fungus Diaporthe longicolla

    • Frontiers in Microbiology
    • The endophytic fungus Diaporthe longicolla was isolated from the stem of Saraca asoca (Roxb.) Willd., commonly known as Ashok plant in India and Sri Lanka. Since no reports are available regarding epigenetic modulations by BRD4770 in microbial entities, D.

      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  3. Improved diagnosis of gastrointestinal infections using a semi-automated multiplex real-time PCR for detection of enteropathogens

    • Microbiology
    • The identification of enteropathogens is critical for the clinical management of patients with suspected gastrointestinal infection. The FLOW multiplex PCR system (FMPS) is a semi-automated platform (FLOW System, Roche) for multiplex real-time PCR analysis.

      • Campylobacter
      • Norovirus
      • Salmonella
      • Shigella
      • Giardia lamblia
      • Cryptosporidium parvum
      • Bacterial pathogens
      • Parasites
      • Viruses
  4. The type 3 secretion system requires actin polymerization to open translocon pores

    • PLOS Pathogens
    • by Brian C. Russo, Jeffrey K. Duncan-Lowey, Poyin Chen, Marcia B. Goldberg Many bacterial pathogens require a type 3 secretion system (T3SS) to establish a niche. Host contact activates bacterial T3SS assembly of a translocon pore in the host plasma membrane. Following pore formation, the T3SS docks onto the translocon pore. Docking establishes a continuous passage that enables the translocation of virulence proteins, effectors, into the host cytosol.

      • Bacterial pathogens
      • Shigella
  5. An investigation into the anaerobic spoilage microbiota of beef carcass and rump steak cuts using high- throughput sequencing

    • FEMS Microbiology Letters
    • ABSTRACT The presence of anaerobic microflora on fresh beef carcass and rump steaks, which may contribute to meat spoilage, was explored in this study. A total of 120 carcass and 120 rump steak swabs were collected immediately after slaughtering and boning, respectively from five meat plants, anaerobically incubated and enriched at 4°C for 3 weeks.

      • Shigella
      • Bacterial pathogens
  6. Chitosan-chelated zinc modulates ileal microbiota, ileal microbial metabolites, and intestinal function in weaned piglets challenged with Escherichia coli K88

    • Applied Microbiology and Biotechnology

      • Shigella
      • Bacterial pathogens
  7. Short-Chain Inulin Modulates the Cecal Microbiota Structure of Leptin Knockout Mice in High-Fat Diet

    • Frontiers in Microbiology
    • The aim of this study was to explore the effect of short-chain inulin on cecal microbiota of high-fat diet-fed leptin knockout mice and the different influences of cecal microbiota on wild-type and leptin knockout mice. A total of 18 specific pathogen-free male C57BL/6J wild-type mice and 18 C57BL/6J leptin knockout mice (OB/OB mice) were selected.

      • Shigella
      • Bacterial pathogens
  8. Effects of 3% Boric Acid Solution on Cutaneous Candida albicans Infection and Microecological Flora Mice

    • Frontiers in Microbiology
    • To determine the effect of 3% boric acid solution on cutaneous infections with Candida albicans (CA) in mice and its effect on skin microflora. Female mice were divided into three groups, with 18 mice in each group. Two injection sites were randomly selected, and 0.1 mL of CA mycelium suspension was injected into the epidermis and dermis of the back of mice. Group N was treated with sterile water for injection (SWFI).

      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  9. Examination of Australian backyard poultry for Salmonella, Campylobacter and Shigella spp., and related risk factors

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Abstract

      • Campylobacter
      • Salmonella
      • Shigella
      • Bacterial pathogens
  10. Molecular Characteristics of Novel Phage vB_ShiP-A7 Infecting Multidrug-Resistant Shigella flexneri and Escherichia coli, and Its Bactericidal Effect in vitro and in vivo

    • Frontiers in Microbiology
    • In recent years, increasing evidence has shown that bacteriophages (phages) can inhibit infection caused by multidrug-resistant (MDR) bacteria. Here, we isolated a new phage, named vB_ShiP-A7, using MDR Shigella flexneri as the host. vB_ShiP-A7 is a novel member of Podoviridae, with a latency period of approximately 35 min and a burst size of approximately 100 phage particles/cell. The adsorption rate constant of phage vB_ShiP-A7 to its host S. flexneri was 1.405 × 10–8 mL/min.

      • Shigella
      • Bacterial pathogens
  11. Oxidized Milk Induces Spatial Learning and Memory Impairment by Altering Gut Microbiota in Offspring Mice during Pregnancy and Lactation

    • Journal of Agricultural and Food Chemistry
    • Early adverse diet exposures are known to be associated with increased risk of learning and memory injury in offspring, yet whether oxidized milk is involved in such an effect has been largely unknown. Here, we focused on oxidized milk intake in mice during pregnancy and lactation to measure the changes in the learning and memory ability in offspring and also probed into the relevant association with gut microbiota.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  12. Acquisition and loss of CTX-M plasmids in Shigella species associated with MSM transmission in the UK

    • Microbiology
    • Shigellosis in men who have sex with men (MSM) is caused by multidrug resistant Shigellae, exhibiting resistance to antimicrobials including azithromycin, ciprofloxacin and more recently the third-generation cephalosporins.

      • Shigella
      • Bacterial pathogens
  13. Potential for Phages in the Treatment of Bacterial Sexually Transmitted Infections

    • Antibiotics
    • Bacterial sexually transmitted infections (BSTIs) are becoming increasingly significant with the approach of a post-antibiotic era. While treatment options dwindle, the transmission of many notable BSTIs, including Neisseria gonorrhoeae, Chlamydia trachomatis, and Treponema pallidum, continues to increase. Bacteriophage therapy has been utilized in Poland, Russia and Georgia in the treatment of bacterial illnesses, but not in the treatment of bacterial sexually transmitted infections.

      • Shigella
      • Cryptosporidium parvum
      • Bacterial pathogens
      • Parasites
  14. Shigella sonnei, an emerging multidrug-resistant sexually transmitted pathogen in Franche-Comté, France

    • Emerging Microbes & Infections
      • Shigella
      • Bacterial pathogens
  15. Identification of an Intestinal Microbiota Signature Associated With the Severity of Necrotic Enteritis

    • Frontiers in Microbiology
    • Necrotic enteritis (NE), an economically devastating disease of poultry caused by pathogenic Clostridium perfringens, is known to induce small intestinal lesions and dysbiosis. However, the intestinal microbes that are associated with NE severity are yet to be characterized. Here, we investigated the link between the ileal microbiota and disease severity in a chicken model of clinical NE using 16S rRNA gene sequencing.

      • Clostridium perfringens
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  16. Characterization of the Genitourinary Microbiome of 1,165 Middle-Aged and Elderly Healthy Individuals

    • Frontiers in Microbiology
    • Accumulated evidence shows that complex microbial communities resides in the healthy human urinary tract and can change in urological disorders. However, there lacks a comprehensive profiling of the genitourinary microbiota in healthy cohort. Here, we performed 16S rRNA gene sequencing of midstream urine specimens from 1,172 middle-aged and elderly healthy individuals.

      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  17. Altered Fecal Microbiota Composition in Older Adults With Frailty

    • Frontiers in Cellular and Infection Microbiology
    • Objective

      Frailty is a common geriatric syndrome that is diagnosed and staged based mainly on symptoms. We aimed to evaluate frailty-related alterations of the intestinal permeability and profile fecal microbiota of healthy and frail older adults to identify microbial biomarkers of this syndrome.

      Methods

      • Shigella
      • Bacterial pathogens
  18. The Clinical Presentation of Culture-positive and Culture-negative, Quantitative Polymerase Chain Reaction (qPCR)-Attributable Shigellosis in the Global Enteric Multicenter Study and Derivation of a Shigella Severity Score: Implications for Pediatric...

    • Clinical Infectious Diseases
    • Background Shigella is a leading cause of childhood diarrhea and target for vaccine development. Microbiologic and clinical case definitions are needed for pediatric field vaccine efficacy trials.

      • Shigella
      • Bacterial pathogens
  19. Diarrheal Pathogens Associated With Growth and Neurodevelopment

    • Clinical Infectious Diseases
    • Background Diarrheal pathogens have been associated with linear growth deficits. The effect of diarrheal pathogens on growth is likely due to inflammation, which also adversely affects neurodevelopment. We hypothesized that diarrheagenic pathogens would be negatively associated with both growth and neurodevelopment.

      • Campylobacter
      • Norovirus
      • Shigella
      • Bacterial pathogens
      • Viruses
  20. Discovery and Bioactivity of the Novel Lasso Peptide Microcin Y

    • Journal of Agricultural and Food Chemistry
    • Lasso peptides, a class of ribosomally synthesized and post-translationally modified peptides (RiPPs) secreted by bacteria, have antimicrobial activity. Here, a novel lasso peptide, microcin Y (MccY), was discovered and characterized. The gene cluster for MccY synthesis was cloned for expression in Escherichia coli. This peptide was purified by HPLC and characterized by Q-TOF.

      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  21. Effects of three essential oils and their nano-emulsions on Listeria monocytogenes and Shigella flexneri in Egyptian Talaga cheese

    • International Journal of Food Microbiology
    • Author(s): Walaa M. Elsherif, Lamiaa M. Talaat AL Shrief

      • Bacterial pathogens
      • Listeria monocytogenes
      • Shigella
  22. Selective Thermotolerant Lactic Acid Bacteria Isolated From Fermented Juice of Epiphytic Lactic Acid Bacteria and Their Effects on Fermentation Quality of Stylo Silages

    • Frontiers in Microbiology
    • The aim of the present study was to isolate and identify lactic acid bacteria (LAB) from fermented juice of tropical crops such as Napier grass, Ruzi grass, Purple guinea grass, Stylo legume, and Leucaena and their application to improve the quality of tropical crop silage. Fifteen strains of LAB were isolated.

      • Shigella
      • Bacterial pathogens
      • Bacillus cereus
  23. Shigella escapes lysosomal degradation through inactivation of Rab31 by IpaH4.5

    • Microbiology
    • is an intracellular bacterial pathogen that utilizes a type III secretion apparatus to inject effector proteins into host cells.

      • Bacterial pathogens
      • Shigella
  24. Behavior of Salmonella Enteritidis and Shigella flexneri during induction and recovery of the viable but nonculturable state

    • FEMS Microbiology Letters
    • ABSTRACT Bacteria may enter into a viable but nonculturable (VBNC) state as a response to stresses, such as those found in food processing. Cells in the VBNC state lose the ability to grow in a conventional culture medium but man recover culturability. The viability, culturability and intracellular reactive oxygen species (ROS) of Salmonella Enteritidis and Shigella flexneri were evaluated under stress conditions to induce a VBNC state.

      • Salmonella
      • Shigella
      • Bacterial pathogens
  25. Therapeutic target identification via differential genome analysis of antibiotic resistant Shigella sonneii and inhibitor evaluation against a selected drug target

    • Infection, Genetics and Evolution
    • Author(s): Zarrin Basharat, Muhammad Jahanzaib, Noor Rahman

      • Shigella
      • Bacterial pathogens