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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 201 - 225 of 620

  1. Virulence factors and molecular characteristics of Shigella flexneri isolated from calves with diarrhea

    • BMC Microbiology
    • Background
      The natural hosts of Shigella are typically humans and other primates, but it has been shown that the host range of Shigella has expanded to many animals. Although Shigella is becoming a major threat to animals, there is limited information on the genetic background of local strains. The purpose of this study was to assess the presence of virulence factors and the molecular characteristics of S. flexneri isolated from calves with diarrhea.

      • Shigella
      • Bacterial pathogens
  2. Modulation of the Intestinal Microbiota by the Early Intervention with Clostridium Butyricum in Muscovy Ducks

    • Antibiotics
    • This study evaluated the effects of early intervention with Clostridium butyricum (C. butyricum) on shaping the intestinal microbiota of Muscovy ducklings. A total of 160 1-day-old male ducks were randomly divided into two groups: the CB group was administered with 1 mL of C. butyricum (2 × 109 CFU/mL), while the C group was given 1 mL of saline. The administration lasted for 3 days. We found that C. butyricum had no significant effect on growth performance.

      • Shigella
      • Bacterial pathogens
  3. Differences in Manifestations and Gut Microbiota Composition Between Patients With Different Henoch-Schonlein Purpura Phenotypes

    • Frontiers in Cellular and Infection Microbiology
    • Background

      Gut microbiota plays an important role in the pathogenesis of immune-mediated diseases. However, the complex pathogenesis of Henoch-Schonlein Purpura (HSP) remains elusive. This study aimed to characterize the gut microbiota in HSP patients and explore the potential association between gut microbiota composition and phenotypic changes in HSP.

      Methods

      • Shigella
      • Bacterial pathogens
  4. Circulation of multidrug-resistant Shigella sonnei and Shigella flexneri among men who have sex with men in Barcelona, Spain, 2015-2019.

    • International Journal of Antimicrobial Agents
    • Author(s): Albert Moreno-Mingorance, Paula Espinal, Virginia Rodriguez, Lidia Goterris, Anna Fàbrega, Judit Serra-Pladevall, M. Jesús Barberà, M. Alberny, Héctor Martín-González, Thais Cornejo-Sánchez, Mayuli Armas, Alba Mir-Cros, Alex Raventós, Belén Viñado, T. Pumarola, M.N. Larrosa, Juan José González-López

      • Shigella
      • Bacterial pathogens
  5. Lactosmart: A Novel Therapeutic Molecule for Antimicrobial Defense

    • Frontiers in Microbiology
    • The problem of antibiotic resistance has prompted researchers around the globe to search for new antimicrobial agents. Antimicrobial proteins and peptides are naturally secreted by almost all the living organisms to fight infections and can be safer alternatives to chemical antibiotics. Lactoferrin (LF) is a known antimicrobial protein present in all body secretions.

      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  6. Escherichia coli Shiga Toxins and Gut Microbiota Interactions

    • Toxins
    • Escherichia coli (EHEC) and Shigella dysenteriae serotype 1 are enterohemorrhagic bacteria that induce hemorrhagic colitis. This, in turn, may result in potentially lethal complications, such as hemolytic uremic syndrome (HUS), which is characterized by thrombocytopenia, acute renal failure, and neurological abnormalities.

      • Shigella
      • Bacterial pathogens
  7. The composition of bacteria in gut and beebread of stingless bees (Apidae: Meliponini) from tropics Yunnan, China

    • Antonie van Leeuwenhoek
    • Stingless bees are the main pollinators in tropical and subtropical regions. However, there are only a few studies on the structure and composition of bacteria in the gut and beebread of stingless bees, especially in China. To address this shortage of information, we characterized the microbiota of three common species of stingless bees (Lepidotrigona terminata, Lepidotrigona ventralis and Tetragonula pagdeni) and beebread samples of T. pagdeni.

      • Shigella
      • Bacterial pathogens
  8. Disruption of metabolic function and redox homeostasis as antibacterial mechanism of Lindera glauca fruit essential oil against Shigella flexneri

    • Food Control
    • Author(s): Feng Chen, Xiang Miao, Zixin Lin, Yu Xiu, Lingling Shi, Qian Zhang, Dongcheng Liang, Shanzhi Lin, Boxiang He

      • Shigella
      • Bacterial pathogens
  9. Composition and Biophysical Properties of the Sorting Platform Pods in the Shigella Type III Secretion System

    • Frontiers in Cellular and Infection Microbiology
    • Shigella flexneri, causative agent of bacillary dysentery (shigellosis), uses a type III secretion system (T3SS) as its primary virulence factor. The T3SS injectisome delivers effector proteins into host cells to promote entry and create an important intracellular niche. The injectisome’s cytoplasmic sorting platform (SP) is a critical assembly that contributes to substrate selection and energizing secretion.

      • Salmonella
      • Shigella
      • Bacterial pathogens
  10. Correction draft: RNA-Mediated Thermoregulation of Iron-Acquisition Genes in Shigella dysenteriae and Pathogenic Escherichia coli

    • PLOS ONE
    • by Andrew B. Kouse, Francesco Righetti, Jens Kortmann, Franz Narberhaus, Erin R. Murphy

      • Shigella
      • Bacterial pathogens
  11. Phytochemical Profile and Microbiological Activity of Some Plants Belonging to the Fabaceae Family

    • Antibiotics
    • This study aimed to investigate the chemical composition and the activity against Staphylococcus aureus (S. aureus) (ATCC 25923), Streptococcus pyogenes (S. pyogenes) (ATCC 19615), Escherichia coli (E. coli) (ATCC 25922), Pseudomonas aeruginosa (P. aeruginosa) (ATCC 27853), Shigella flexneri (S. flexneri) (ATCC 12022), Salmonella typhimurium (S. typhimurium) (ATCC 14028), Haemophillus influenzae (H. influenza) type B (ATCC 10211) and two fungal strains: Candida albicans (C.

      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  12. Lewis Blood-group Antigens Are Associated With Altered Susceptibility to Shigellosis

    • Clinical Infectious Diseases
    • In a cohort of infants, we found that lack of the Lewis histo-blood group antigen was associated with increased susceptibility to shigellosis. Broadly inhibiting fucosylation in epithelial cells in vitro decreased invasion by Shigella flexneri. These results support a role for fucosylated glycans in susceptibility to shigellosis.

      • Shigella
      • Bacterial pathogens
  13. Duration of Postdiarrheal Enteric Pathogen Carriage in Young Children in Low-resource Settings

    • Clinical Infectious Diseases
    • Background Prolonged enteropathogen shedding after diarrhea complicates the identification of etiology in subsequent episodes and is an important driver of pathogen transmission. A standardized approach has not been applied to estimate the duration of shedding for a wide range of pathogens.

      • Shigella
      • Cryptosporidium parvum
      • Bacterial pathogens
      • Parasites
  14. Prevalence and associated risk factors of Shigella flexneri isolated from drinking water and retail raw foods in Peshawar, Pakistan

    • Journal of Food Science
    • Journal of Food Science, EarlyView. This study was designed to investigate the prevalence and associated risk factors of Shigella flexneri isolated from drinking water and retail raw food samples in Peshawar, Pakistan. A total of 1,020 different samples were collected from various areas of Peshawar between January 2016 and May 2017, followed by identification of S. flexneri through biochemical, serological, and 16S rRNA gene sequencing.

      • Shigella
      • Bacterial pathogens
  15. Chemical composition, antimicrobial, antioxidant and cytotoxic activity of the essential oil from the leaves of Stachys pilifera Benth

    • FEMS Microbiology Letters
    • ABSTRACT Stachys pilifera Benth is an endemic species of Stachys family found in Iran with a wide application as an herbal tea. The objective of this research was to evaluate the antimicrobial, antioxidant and cytotoxic activity of the essential oil from the aerial parts of S. pilifera.

      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
      • Bacillus cereus
  16. Antimicrobial and anti-biofilm activity of thymoquinone against Shigella flexneri

    • Applied Microbiology and Biotechnology

      • Shigella
      • Bacterial pathogens
  17. Virulence profiling of Shigella flexneri and emergence of serotype 2b as a highly virulent shigellosis causing strain in Pakistan

    • Infection, Genetics and Evolution
    • Author(s): Iqbal Nisa, Muhammad Qasim, Arnold Driessen, Jeroen Nijland, Fazal Adnan, Malik Nawaz Shuja, Hazir Rahman

      • Shigella
      • Bacterial pathogens
  18. Clinical Outcomes of Drug-resistant Shigellosis Treated With Azithromycin in Bangladesh

    • Clinical Infectious Diseases
    • Background Azithromycin is frequently used to treat shigellosis; however, clinical outcomes are uncertain. Methods We performed an observational cohort study in Bangladesh of patients with invasive diarrhea treated empirically with azithromycin. Susceptibility testing was performed by broth microdilution and disk diffusion post hoc on all Shigella isolates and clinical response was correlated with in vitro susceptibility.

      • Shigella
      • Bacterial pathogens
  19. Host Genome-Wide Association Study of Infant Susceptibility to Shigella-Associated Diarrhea

    • Infection and Immunity
    • Shigella is a leading cause of moderate-to-severe diarrhea globally and the causative agent of shigellosis and bacillary dysentery. Associated with 80 to 165 million cases of diarrhea and >13% of diarrheal deaths, in many regions, Shigella exposure is ubiquitous while infection is heterogenous.

      • Shigella
      • Bacterial pathogens
  20. Gut microbiota profiles of young South Indian children: Child sex-specific relations with growth

    • PLOS ONE
    • by Nirupama Shivakumar, Ambily Sivadas, Sarita Devi, Farook Jahoor, John McLaughlin, Craig P. Smith, Anura V. Kurpad, Arpita Mukhopadhyay

      • Shigella
      • Bacterial pathogens
  21. Molecular Characterization of Multidrug-Resistant Yersinia enterocolitica From Foodborne Outbreaks in Sweden

    • Frontiers in Microbiology
    • The foodborne pathogen Yersinia enterocolitica causes gastrointestinal infections worldwide. In the spring of 2019, the Swedish Public Health Agency and Statens Serum Institut in Denmark independently identified an outbreak caused by Yersinia enterocolitica 4/O:3 that after sequence comparison turned out to be a cross-border outbreak. A trace-back investigation suggested shipments of fresh prewashed spinach from Italy as a common source for the outbreak.

      • Salmonella
      • Yersinia
      • Shigella
      • Bacterial pathogens
  22. Profiling of Diagnostic Information of and Latent Susceptibility to Bacterial Keratitis From the Perspective of Ocular Bacterial Microbiota

    • Frontiers in Cellular and Infection Microbiology
    • The ocular surface possesses its own bacterial microbiota. Once given a chance, opportunistic pathogens within ocular microbiota may lead to corneal infection like bacterial keratitis (BK). To reveal the possible factor that makes people vulnerable to BK from the perspective of ocular bacterial microbiota, as well as to compare diagnostic information provided by high-throughput 16S rDNA sequencing and bacterial culture, 20 patients with BK and 42 healthy volunteers were included.

      • Shigella
      • Bacterial pathogens
  23. The GBP1 microcapsule interferes with IcsA-dependent septin cage assembly around Shigella flexneri

    • Pathogens and Disease
    • ABSTRACT Many cytosolic bacterial pathogens hijack the host actin polymerization machinery to form actin tails that promote direct cell-to-cell spread, enabling these pathogens to avoid extracellular immune defenses. However, these pathogens are still susceptible to intracellular cell-autonomous immune responses that restrict bacterial actin-based motility.

      • Shigella
      • Bacterial pathogens
  24. Whole genome sequence analysis of Shigella from Malawi identifies fluoroquinolone resistance

    • Microbiology
    • Increasing antimicrobial resistance and limited alternative treatments have led to fluoroquinolone-resistant strain inclusion on the WHO global priority pathogens list.

      • Shigella
      • Bacterial pathogens
  25. Modeling Enteropathy or Diarrhea with the Top Bacterial and Protozoal Pathogens: Differential Determinants of Outcomes

    • ACS Infectious Diseases
    • Developing effective therapeutics or preventive interventions for important health threats is greatly enhanced whenever accessible models can enable the assessment of clinically important outcomes. While no non-human model is ever perfect, inexpensive in vivo small animal models in such as mice are often of great help in assessing the relevant efficacy of potential interventions.

      • Campylobacter
      • Shigella
      • Giardia lamblia
      • Cryptosporidium parvum
      • Bacterial pathogens
      • Parasites