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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 201 - 225 of 673

  1. Advances in Analysis of Contaminants in Foodstuffs on the Basis of Orbitrap Mass Spectrometry: a Review

    • Food Analytical Methods
    • Abstract

      • Antibiotic residues
      • Pesticide residues
      • Chemical contaminants
  2. Engineering of Cytolethal Distending Toxin B by Its Reducing Immunogenicity and Maintaining Stability as a New Drug Candidate for Tumor Therapy; an In Silico Study

    • Toxins
    • The cytolethal distending toxin (CDT), Haemophilus ducreyi, is one of the bacterial toxins that have recently been considered for targeted therapies, especially in cancer therapies. CDT is an A-B2 exotoxin. Its catalytic subunit (CdtB) is capable of inducing DNA double strand breaks, cell cycle arrest and apoptosis in host eukaryotic cells. The sequence alignment indicates that the CdtB is structurally homologyr to phosphatases and deoxyribonucleases I (DNase I).

      • Antibiotic residues
      • Chemical contaminants
  3. Bach1 derepression is neuroprotective in a mouse model of Parkinson’s disease

    • Proceedings of the National Academy of Sciences
    • Parkinson's disease (PD) is a progressive neurodegenerative movement disorder characterized by the loss of nigrostriatal dopaminergic neurons. Mounting evidence suggests that Nrf2 is a promising target for neuroprotective interventions in PD. However, electrophilic chemical properties of the canonical Nrf2-based drugs cause irreversible alkylation of cysteine residues on cellular proteins resulting...

      • Antibiotic residues
      • Chemical contaminants
  4. In silico repurposing of a Novobiocin derivative for activity against latency associated Mycobacterium tuberculosis drug target nicotinate-nucleotide adenylyl transferase (Rv2421c)

    • PLOS ONE
    • by Ruben Cloete, Mohd Shahbaaz, Melanie Grobbelaar, Samantha L. Sampson, Alan Christoffels

      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  5. Whole-Cell Biocatalyst for Rubusoside Production in Saccharomyces cerevisiae

    • Journal of Agricultural and Food Chemistry
    • Rubusoside (Rub) is a highly sweet diterpene glycoside mainly isolated from the leaves of Rubus suavissimus (Rosaceae). It has been used as a low-calorie natural sweetener for decades and was recently found to be a potential drug lead. In this study, we designed a whole-cell biocatalyst to achieve the glycosylation of steviol to Rub in Saccharomyces cerevisiae.

      • Heavy Metals
      • Antibiotic residues
      • Chemical contaminants
  6. Detection of Residual Antibiotics and Their Differential Distribution in Broiler Chicken Tissues Using Enzyme-Linked Immunosorbent Assay

    • Antibiotics
    • The aim of this study was to estimate the residue levels of five commonly used antibiotics in poultry tissue samples using enzyme linked immunosorbent assay (ELISA). A total of 200 samples that comprised breast and liver (100 each) were collected from five poultry farms randomly selected from Muscat regions. The samples were analyzed for enrofloxacin (ENR), gentamicin (GEN), oxytetracycline (OTC), sulfamethazine (SMZ), and tylosin (TYL) residue concentrations.

      • Antibiotic residues
      • Chemical contaminants
  7. Alanine-scanning mutagenesis of protein mannosyl-transferase from Streptomyces coelicolor reveals strong activity-stability correlation

    • Microbiology
    • In , protein O-mannosyl transferase (Pmt)-mediated protein O-glycosylation has an important role in cell envelope physiology. In

      • Antibiotic residues
      • Chemical contaminants
  8. Optimization of 204 veterinary drug residues method and establishing their mass spectrum library

    • International Journal of Food Properties
    • A multi-class multi-residue analytical method was validated in this paper for simultaneously identifying 204 veterinary drugs in pork by UPLC-QTRAP MS/MS, including sulfonamides, quinolones, β-agonists, and nitroimidazoles. MRM-IDA-EPI mode of QTRAP was used to establish a secondary mass spectrum library of these 204 veterinary drugs, which could enhance the qualitative analysis of suspect substances.

      • Antibiotic residues
      • Chemical contaminants
  9. The pharmacokinetics of transdermal flunixin in lactating dairy goats

    • Journal of Dairy Science
    • Flunixin is a nonsteroidal anti-inflammatory drug approved for use in cattle to manage pyrexia associated with bovine respiratory disease, mastitis, and endotoxemia. In the United States, no nonsteroidal anti-inflammatory drugs are approved for use in goats, but analgesics are needed for management of painful conditions to improve animal welfare.

      • Antibiotic residues
      • Chemical contaminants
  10. Abatement of antibiotics and antimicrobial resistance genes from cephalosporin fermentation residues by ionizing radiation: From lab-scale study to full-scale application

    • Journal of Cleaner Production
    • Author(s): Libing Chu, Jianlong Wang, Chuanhong Chen, Yunpeng Shen, Shijun He, László Wojnárovits, Erzsébet Takács, Youxue Zhang

      • Antibiotic residues
      • Chemical contaminants
  11. Efficacy of epetraborole against Mycobacterium abscessus is increased with norvaline

    • PLOS Pathogens
    • by Jaryd R. Sullivan, Andréanne Lupien, Elias Kalthoff, Claire Hamela, Lorne Taylor, Kim A. Munro, T. Martin Schmeing, Laurent Kremer, Marcel A. Behr

      • Antibiotic residues
      • Chemical contaminants
  12. Targeting PirAvp and PirBvp Toxins of Vibrio parahaemolyticus with Oilseed Peptides: An In Silico Approach

    • Antibiotics
    • Acute hepatopancreatic necrosis disease (AHPND), caused by PirAvp- and PirBvp-releasing Vibrio parahaemolyticus strains, has resulted in massive mortality in shrimp aquaculture. Excessive use of antibiotics for AHPND management has led to antibiotic resistance, highlighting the urgency to search for alternatives. Using an in silico approach, we aimed to discover PirAvp/PirBvp-binding peptides from oilseed meals as alternatives to antibiotics.

      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  13. Screening and Identification of a Novel Anti-tuberculosis Compound That Targets Deoxyuridine 5′-Triphosphate Nucleotidohydrolase

    • Frontiers in Microbiology
    • Tuberculosis (TB) is still a threat to humans worldwide. The rise of drug-resistant TB strains has escalated the need for developing effective anti-TB agents. Deoxyuridine 5′-triphosphate nucleotidohydrolase (dUTPase) is essential for thymidylate biosynthesis to maintain the DNA integrity. In Mycobacterium tuberculosis, dUTPase provides the sole source for thymidylate biosynthesis, which also has the specific five-residue loop and the binding pockets absent in human dUTPase.

      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  14. Pharmacophore-based screening and modification of amiloride analogs for targeting the NhaP-type cation-proton antiporter in Vibrio cholerae

    • Canadian Journal of Microbiology
    • The genome of Vibrio cholerae contains three structural genes for the NhaP-type cation-proton antiporter paralogues, Vc-NhaP1, Vc-NhaP2, and Vc-NhaP3, mediating exchange of K+ and or Na+ for protons across the membrane.

      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  15. Asymmetric protonation of glutamate residues drives a preferred transport pathway in EmrE

    • Proceedings of the National Academy of Sciences
    • EmrE is an Escherichia coli multidrug efflux pump and member of the small multidrug resistance (SMR) family that transports drugs as a homodimer by harnessing energy from the proton motive force. SMR family transporters contain a conserved glutamate residue in transmembrane 1 (Glu14 in EmrE) that is required for binding...

      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  16. Phosphorylation of Extracellular Proteins in Acinetobacter baumannii in Sessile Mode of Growth

    • Frontiers in Microbiology
    • Acinetobacter baumannii is a problematic nosocomial pathogen owing to its increasing resistance to antibiotics and its great ability to survive in the hospital environment, which is linked to its capacity to form biofilms. Structural and functional investigations of post-translational modifications, such as phosphorylations, may lead to identification of candidates for therapeutic targets against this pathogen. Here, we present the first S/T/Y phosphosecretome of two A.

      • Chemical contaminants
      • Antibiotic residues
  17. Characterization, Biological Activity, and Mechanism of Action of a Plant-Based Novel Antifungal Peptide, Cc-AFP1, Isolated From Carum carvi

    • Frontiers in Cellular and Infection Microbiology
    • Due to the increasing rate of invasive fungal infections and emerging antifungal resistance, development of novel antifungal drugs has been an urgent necessity. Antifungal peptides (AFPs) have recently attracted attention due to their unique ability to evade drug-resistant fungal pathogens.

      • Antibiotic residues
      • Chemical contaminants
  18. Development and Application of an Interactive Physiologically Based Pharmacokinetic (iPBPK) Model to Predict Oxytetracycline Tissue Distribution and Withdrawal Intervals in Market-Age Sheep and Goats

    • Toxicological Sciences
    • Oxytetracycline (OTC) is a widely used antibiotic in food-producing animals. Extralabel use of OTC is common and may lead to violative residues in edible tissues. It is important to have a quantitative tool to predict scientifically based withdrawal intervals (WDIs) after extralabel use in food animals to ensure human food safety. This study focuses on developing a physiologically based pharmacokinetic (PBPK) model for OTC in sheep and goats.

      • Antibiotic residues
      • Chemical contaminants
  19. Fertilization with Poultry Litter Increases the Abundance of Antibiotic-Resistant Bacteria in Tropical Soil: a Microcosm Study

    • Water, Air, & Soil Pollution
    • Various antimicrobial agents are used in the poultry industry to treat microbial infections and prevent disease or as growth promoters. As a result, poultry litter (PL) can contain antibiotic residues (AR), antibiotic-resistant bacteria (ARB), and antibiotic resistance genes. Still, PL is used in many countries as a fertilizer and feed supplement for cattle.

      • Antibiotic residues
      • Chemical contaminants
  20. Comparative analysis of the unbinding pathways of antiviral drug Indinavir from HIV and HTLV1 proteases by supervised molecular dynamics simulation

    • PLOS ONE
    • by Farzin Sohraby, Hassan Aryapour

      • Antibiotic residues
      • Chemical contaminants
  21. Effects of Partial Organic Substitution for Chemical Fertilizer on Antibiotic Residues in Peri-Urban Agricultural Soil in China

    • Antibiotics
    • Recycling of organic wastes in agricultural ecosystems to partially substitute chemical fertilizer is recommended to improve soil productivity and alleviate environmental degradation. However, livestock manure- and sewage sludge-derived amendments are widely known to potentially carry antibiotic residues.

      • Antibiotic residues
      • Chemical contaminants
  22. Roadmap for the use of base editors to decipher drug mechanism of action

    • PLOS ONE
    • by Estel Aparicio-Prat, Dong Yan, Marco Mariotti, Michael Bassik, Gaelen Hess, Jean-Philippe Fortin, Andrea Weston, Hualin S. Xi, Robert Stanton

      • Antibiotic residues
      • Chemical contaminants
  23. Which illicit drugs are injected in Oslo? A study based on analysis of drug residues in used injection equipment and self-reported information

    • Scandinavian Journal of Public Health
    • BackgroundPeople who inject drugs (PWID) have a high risk of premature death due to fatal overdoses. Newly emerged fentanyls, much more potent than heroin and other opioids, may increase this risk further.

      • Antibiotic residues
      • Chemical contaminants
  24. In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2

    • PLOS Pathogens
    • by Agnieszka M. Szemiel, Andres Merits, Richard J. Orton, Oscar A. MacLean, Rute Maria Pinto, Arthur Wickenhagen, Gauthier Lieber, Matthew L. Turnbull, Sainan Wang, Wilhelm Furnon, Nicolas M. Suarez, Daniel Mair, Ana da Silva Filipe, Brian J. Willett, Sam J. Wilson, Arvind H. Patel, Emma C. Thomson, Massimo Palmarini, Alain Kohl, Meredith E. Stewart

      • Antibiotic residues
      • Chemical contaminants
  25. Understanding Antibiotic Usage on Small-Scale Dairy Farms in the Indian States of Assam and Haryana Using a Mixed-Methods Approach—Outcomes and Challenges

    • Antibiotics
    • The use and misuse of antibiotics in both humans and animals contributes to the global emergence of antimicrobial resistant (AMR) bacteria, a threat to public health and infection control. Currently, India is the world’s leading milk producer but antibiotic usage within the dairy sector is poorly regulated. Little data exists reflecting how antibiotics are used on dairy farms, especially on small-scale dairy farms in India.

      • Antibiotic residues
      • Chemical contaminants