An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 26 - 50 of 184

  1. Environmental parameters associated with incidence and transmission of pathogenic Vibrio spp.

    • Environmental Microbiology
    • Environmental Microbiology, Volume 23, Issue 12, Page 7314-7340, December 2021. Vibrio spp. thrive in warm water and moderate salinity, and they are associated with aquatic invertebrates, notably crustaceans and zooplankton. At least 12 Vibrio spp. are known to cause infection in humans, and Vibrio cholerae is well documented as the etiological agent of pandemic cholera.

      • Bacterial pathogens
      • Vibrio
  2. Ecology of Listeria monocytogenes and Listeria species in India: the occurrence, resistance to biocides, genomic landscape and biocontrol

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView.

      • Bacterial pathogens
      • Listeria monocytogenes
  3. Host‐modifying drugs against COVID‐19: some successes, but not yet the breakthrough

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView.

      • Viruses
      • COVID-19
  4. Interactions between Bdellovibrio and like organisms and bacteria in biofilms: beyond predator–prey dynamics

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView.

      • Bacterial pathogens
      • Vibrio
  5. Clinical trials with antiviral drugs against COVID‐19: some progress and many shattered hopes

    • Environmental Microbiology
    • Environmental Microbiology, Volume 23, Issue 11, Page 6364-6376, November 2021.

      • Viruses
      • COVID-19
  6. Campylobacterota dominate the microbial communities in a tropical karst subterranean estuary, with implications for cycling and export of nitrogen to coastal waters

    • Environmental Microbiology
    • Environmental Microbiology, Volume 23, Issue 11, Page 6749-6763, November 2021.

      • Bacterial pathogens
      • Campylobacter
  7. Widespread Contamination of SARS‐CoV‐2 on Highly Touched Surfaces in Brazil During the Second Wave of the COVID‐19 Pandemic

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article.

      • Viruses
      • COVID-19
  8. Histone acetyltransferases MystA and MystB contribute to morphogenesis and aflatoxin biosynthesis by regulating acetylation in fungus Aspergillus flavus

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView.

      • Natural toxins
      • Aflatoxins
      • Mycotoxins
  9. Low occurrence of multi‐antimicrobial and heavy metal resistance in Salmonella enterica from wild birds in the United States

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView. Antibiotics and heavy metals are used to treat and prevent bacterial infections in humans and food-producing animals (Argudín et al., 2019; WHO, 2021).

      • Bacterial pathogens
      • Salmonella
  10. Ruminant‐associated Listeria monocytogenes isolates belong preferentially to dairy‐associated hypervirulent clones: a longitudinal study in 19 farms

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView.

      • Bacterial pathogens
      • Listeria monocytogenes
  11. Low phosphate mitigates cadmium‐induced oxidative stress in Saccharomyces cerevisiae by enhancing endogenous antioxidant defence system

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView.

      • Chemical contaminants
      • Heavy Metals
  12. A thermophile Hydrogenibacillus sp. strain efficiently degrades environmental pollutants polycyclic aromatic hydrocarbons

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView. Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous pollutants threatening ecosystems and human health. Here, we isolated and characterized a new strain, Hydrogenibacillus sp. N12, which is a thermophilic PAH-degrader. Strain N12 utilizes naphthalene as a sole carbon and energy source above 60°C and co-metabolizes many other PAHs as well.

      • Chemical contaminants
  13. Low phosphate mitigates cadmium‐induced oxidative stress in Saccharomyces cerevisiae by enhancing endogenous antioxidant defence system

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView. Cadmium is a highly toxic heavy metal that causes many harmful effects on human health and ecosystems. Metal chelation-based techniques have become a common approach for the treatment of metal poisoning and also for the remediation of metal contamination. Phosphate, an essential nutrient required for key cellular functions, has been supposed to be effective in reducing cadmium bioavailability, possibly through its chelating potential.

      • Heavy Metals
      • Chemical contaminants
  14. Low occurrence of multi‐antimicrobial and heavy metal resistance in Salmonella enterica from wild birds in the United States

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView. Wild birds are common reservoirs of Salmonella enterica. Wild birds carrying resistant S. enterica may pose a risk to public health as they can spread the resistant bacteria across large spatial scales within a short time. Here, we whole-genome sequenced 375 S. enterica strains from wild birds collected in 41 U.S. states during 1978–2019 to examine bacterial resistance to antibiotics and heavy metals. We found that Typhimurium was the dominant S.

      • Salmonella
      • Bacterial pathogens
  15. Ruminant‐associated Listeria monocytogenes isolates belong preferentially to dairy‐associated hypervirulent clones: a longitudinal study in 19 farms

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article. Studies have shown that ruminants constitute reservoirs of Listeria monocytogenes, but little is known about the epidemiology and genetic diversity of this pathogen within farms. Here we conducted a large-scale longitudinal study to monitor Listeria spp. in 19 dairy farms during three consecutive seasons (N=3251 samples). L. innocua was the most prevalent species, followed by L. monocytogenes. L.

      • Listeria monocytogenes
      • Bacterial pathogens
  16. Histone acetyltransferases MystA and MystB contribute to morphogenesis and aflatoxin biosynthesis by regulating acetylation in fungus Aspergillus flavus

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article. Myst family are highly conserved histone acetyltransferases in eukaryotic cells and are known to play crucial roles in various cellular processes, however, acetylation catalyzed by acetyltransferases is unclear in filamentous fungi. Here, we identified two classical nonessential Myst enzymes and analyzed their functions in Aspergillus flavus, which generates aflatoxin B1, one of the most carcinogenic secondary metabolites.

      • Aflatoxins
      • Natural toxins
  17. Ecology of Listeria monocytogenes and Listeria species in India: the occurrence, resistance to biocides, genomic landscape and biocontrol

    • Environmental Microbiology
    • Environmental Microbiology, EarlyView. Listeria monocytogenes, the causative agent of listeriosis, has been implicated in increasing foodborne outbreaks worldwide. The disease is manifested in various forms ranging from severe sepsis in immune-compromised individuals, febrile gastroenteritis, still birth, abortions and meningoencephalitis. In India, data from studies on the detection and molecular epidemiological analysis of L. monocytogenes are only recently emerging.

      • Listeria monocytogenes
      • Bacterial pathogens
  18. Antibacterial efficacy of in‐house designed cell‐penetrating peptide against multi‐drug resistant strains of Salmonella Enteritidis and Salmonella Typhimurium

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article. The in vitro antibacterial efficacy of an in-house designed cell-penetrating peptide (CPP) variant of Cecropin A (1–7)-Melittin (CAMA) (CAMA-CPP) against the characterized multi-drug resistant (MDR) field strains of and Salmonella Typhimurium were evaluated and compared with two identified CPPs namely, P7 and APP, keeping CAMA as control.

      • Salmonella
      • Bacterial pathogens
  19. Secretome Analysis Reveals A Role of Subinhibitory Concentrations of Polymyxin B in the Survival of A Vibrio Cholerae Mediated by the Type VI Secretion System

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article. Antimicrobials are commonly used in prevention of infections including in aquaculture, agriculture and medicine. Subinhibitory concentrations of antimicrobial peptides (AMPs) can modulate resistance, virulence and persistence effectors in Gram-negative pathogens.

      • Vibrio
      • Bacterial pathogens
  20. Role of the YehD fimbriae in the virulence‐associated properties of enteroaggregative Escherichia coli

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article. ABSTRACT

      • Bacterial pathogens
  21. Whole‐genome analysis of Klebsiella pneumoniae from bovine mastitis milk in the U.S.

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article. Dairy cattle mastitis has long been one of the most common and costly diseases in dairy industry worldwide, due to its significant impact on milk production and animal welfare. Among all mastitis causing bacterial pathogens, Klebsiella pneumoniae (K. pneumoniae) causes the largest milk loss. To better understand the genomic features of this population, 180 K. pneumoniae strains isolated from dairy cattle mastitis milk in 11 U.S.

      • Bacterial pathogens
  22. PeMetR‐mediated sulphur assimilation is essential for virulence and patulin biosynthesis in Penicillium expansum

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article. Penicillium expansum, as the causal agent of blue mould and a main producer of mycotoxin patulin, is a global concern for economic and food safety. To date, the nutritional requirements of the pathogen during infection and patulin biosynthesis are poorly understood. Here, we genetically characterized the role of the bZIP transcription factor PeMetR in sulphur metabolism, virulence and patulin biosynthesis of P. expansum.

      • Mycotoxins
      • Natural toxins
  23. From farm to fork: colistin voluntary withdrawal in Portuguese farms reflected in decreasing occurrence of mcr‐1‐carrying Enterobacteriaceae from chicken meat

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article. Expansion of mcr-carrying Enterobacteriaceae (MCR-E) is a well-recognized problem affecting animals, humans and the environment. Ongoing global control actions involve colistin restrictions among food-animal production, but their impact on poultry-derived products is largely unknown, justifying comprehensive farm-to-fork studies.

      • Bacterial pathogens
  24. Transcription activation of two clusters for exopolysaccharide biosynthesis by phosphorylated DctD in Vibrio vulnificus

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article.

      • Vibrio
      • Bacterial pathogens
  25. Ras Subfamily GTPases Regulate Development, Aflatoxin Biosynthesis and Pathogenicity in the Fungus Aspergillus flavus

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article. Ras subfamily proteins are molecular switches in signal transduction pathways of many eukaryotes that regulate a variety of cellular processes. Here, the Ras subfamily, encoded by six genes, was identified in Aspergillus flavus: rasA, rasB, rasC, rab-33, rheb and rsr1. The rsr1 deletion mutant (∆rsr1), rheb deletion mutant (∆rheb), and double deletion mutant (∆rheb/rsr1) displayed significantly decreased growth and sporulation.

      • Aflatoxins
      • Natural toxins