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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 243

  1. A Retrospective Analysis of Postmortem Salmonella Dublin Cases in Dairy Cattle in British Columbia

    • Transboundary and Emerging Diseases
    • Salmonella Dublin is a bovine‐adapted bacterial pathogen that primarily affects dairy cattle. The incidence of S. Dublin has been increasing across North America, including strains that are multidrug resistant. In British Columbia, the Ministry of Agriculture’s Animal Health Center (AHC) reported an increase in cases since 2015, warranting an investigation into how S. Dublin is spreading within the province.

      • Bacterial pathogens
      • Salmonella
  2. First Report and Genetic Characterization of Border Disease Virus in Sheep from Hulunbuir, Northeastern China

    • Transboundary and Emerging Diseases
    • Border disease virus (BDV), a member of the Pestivirus genus within the Flaviviridae family, is known to inflict significant economic losses on livestock farms due to its association with reproductive disorders and persistent infections in sheep and goats. However, comprehensive epidemiological investigations of BDV in China are scarce.

      • Viruses
      • Pestivirus
  3. First Detection of International High‐Risk blaKPC-2‐Harbouring Escherichia coli Pandemic Lineage ST648 in Pet Food Packages

    • Transboundary and Emerging Diseases
    • The continued worldwide increase in pet ownership has significantly boosted the growth of the pet food industry accompanied by new food safety risks and challenges. This study was designed to determine the occurrence and molecularly characterize multidrug‐resistant (MDR) Enterobacterales in pet food. Eighty‐six (86) packages of dry and wet pet food purchased in different retail stores were screened for carbapenem‐resistant Enterobacterales (CRE).

      • Bacterial pathogens
      • Cronobacter
  4. First Report of Myocastor coypus Infected with Staphylococcus cohnii

    • Transboundary and Emerging Diseases
    • In December 2021, a wildlife conservation base in Hunan, China, reported illness and death among its captive Myocastor coypus population. A gram‐positive pathogen was isolated from the affected animals. The 16S rDNA sequence of the isolated strain was approximately 1,500 bp long and exhibited 98.4% homogeneity with Staphylococcus cohnii found in sea cucumbers. Interestingly, the biochemical reactions of the isolated strain were consistent with the characteristics of S. cohnii.

      • Bacterial pathogens
      • Staphylococcus aureus
  5. Seasonal Mortality of Wild Atlantic Menhaden (Brevoortia tyrannus) Is Caused by a Virulent Clone of Vibrio (Listonella) anguillarum; Implications for Biosecurity along the Atlantic Coastal United States

    • Transboundary and Emerging Diseases
    • Atlantic menhaden are a highly migratory marine species in the Eastern United States that suffer from seasonal chronic mortality. Affected fish show neurologic signs referred to as spinning disease, including circling at the surface and erratic corkscrew swimming before death. We investigated three similar menhaden mortality events consistent with spinning disease in coastal New Jersey and New York between 2020 and 2021 to understand the cause.

      • Bacterial pathogens
      • Vibrio
      • Yersinia
  6. Antimicrobial Resistance and Genomic Characterization of Salmonella Isolated from Pigeons in China

    • Transboundary and Emerging Diseases
    • Salmonellosis is one of the important bacterial infectious diseases affecting the health of pigeons. Heretofore, the epidemiological characteristics of Salmonella in pigeon populations in China remain largely unclear. The present study investigated the antimicrobial resistance and genomic characteristics of Salmonella isolates in pigeons in different regions of China from 2022 to 2023.

      • Bacterial pathogens
      • Salmonella
  7. Potential Zoonotic Transmission of Giardia duodenalis between Children and Calves in Bangladesh

    • Transboundary and Emerging Diseases
    • Giardia duodenalis is a zoonotic protozoan parasite that causes gastrointestinal illness in humans and livestock. We studied the genetic diversity of G. duodenalis in children and calves from Bangladesh to determine its zoonotic potential. Fecal samples collected from children (299) and calves (699) were screened with nested PCR with primers targeting the ssu rRNA gene for G. duodenalis.

      • Parasites
      • Giardia lamblia
  8. High Prevalence of Livestock‐Associated Methicillin‐Resistant Staphylococcus aureus in Hungarian Pig Farms and Genomic Evidence for the Spillover of the Pathogen to Humans

    • Transboundary and Emerging Diseases
    • Livestock‐Associated Methicillin‐ResistantStaphylococcus aureus (LA‐MRSA) strains of clonal complex (CC) 398 are widely disseminated in pigs and are considered emerging pathogens in human medicine. To investigate the prevalence, genetic characteristics, and zoonotic potential of the pathogen in pig production settings, dust samples were collected from 40 pig operations in Hungary, along with nasal swabs of attending veterinarians and other swine professionals (n = 27) in 2019.

      • Bacterial pathogens
      • Staphylococcus aureus
  9. An Inactivated Novel Trivalent Vaccine Provides Complete Protection against FAdV‐4 Causing Hepatitis‐Hydropericardium Syndrome and FAdV‐8b/‐11 Causing Inclusion Body Hepatitis

    • Transboundary and Emerging Diseases
    • Outbreaks of hepatitis‐hydropericardium syndrome (HHS) caused by fowl adenovirus serotype 4 (FAdV‐4) and inclusion body hepatitis (IBH) related to FAdV‐8b and FAdV‐11 have been increased in chickens in China since 2015. Clinical concurrent infections of FAdV‐4, FAdV‐8b, and FAdV‐11 are quite common, yet there are no commercially available trivalent vaccines against infection by these three serotypes.

      • Viruses
      • Hepatitis
  10. A Maximum Entropy Species Distribution Model to Estimate the Distribution of Bushpigs on Madagascar and Its Implications for African Swine Fever

    • Transboundary and Emerging Diseases
    • Bushpigs (Potamochoerus larvatus) play a major role in the socio‐ecosystem of Madagascar, particularly in rural areas. They are largely hunted by rural populations as a major source of income and protein. They can also represent a potential source of pathogens for domestic animals and people. For example, it is hypothesized that bushpigs might compromise African swine fever (ASF) eradication programs by sporadically transmitting the virus to domestic pigs.

      • Viruses
      • Hepatitis
  11. Monitoring of Hepatitis E Virus in Wild Lagomorphs in Spanish Mediterranean Ecosystems

    • Transboundary and Emerging Diseases
    • Hepatitis E virus (HEV) is an emerging zoonotic pathogen in Europe. Even though swine species are considered the main host of the zoonotic HEV‐3 genotype, rabbits are recognized as the main reservoir of the divergent HEV‐3ra subtype. However, the role of wild lagomorphs in the epidemiology of this virus in Mediterranean ecosystems is under debate.

      • Viruses
      • Hepatitis
  12. Isolation and Pathogenicity Analysis of a Novel Orthoreovirus Caused the Outbreak of Duck Viral Arthritis in China

    • Transboundary and Emerging Diseases
    • Novel duck orthoreovirus can infect various hosts, mainly causing spleen necrosis and hemorrhagic necrotizing hepatitis, leading to immunosuppression and growth impairment. Infectious diseases characterized by swollen hock joints, movement disorders, and impaired growths have recently occurred in significant duck breeding areas in China. Infected ducks from Shandong Province were selected, and N‐DRV‐LY20 was isolated from the swollen joints.

      • Viruses
      • Hepatitis
  13. Molecular Detection and Genetic Characterization of Bovine Kobuvirus (BKV) in Diarrhoeic Calves in a Central Italy Herd

    • Transboundary and Emerging Diseases
    • Bovine kobuvirus (BKV) is an infectious agent associated with neonatal calf diarrhoea (NCD), causing important economic losses to dairy and beef cattle herds worldwide. Here, we present the detection rate and characterize the genome of BKV isolated from diarrhoeic calves from a Central Italy herd. From January to December 2021, we collected blood samples and nasal and rectal swabs from 66 calves with severe NCD between 3 and 20 days of age.

      • Bacterial pathogens
      • Salmonella
      • Parasites
      • Cryptosporidium parvum
      • Giardia lamblia
  14. High Prevalence and Genetic Heterogeneity of Genotype 3 Hepatitis E Virus in Wild Boar in Umbria, Central Italy

    • Transboundary and Emerging Diseases
    • Hepatitis E virus (HEV) is an important human pathogen and, in developed countries, most human infections are due to a zoonotic cycle, mainly maintained by domestic and wild suids. In European countries several genotype 3 strains have been found to circulate in human population and animal reservoirs, with human infections being related mostly to pork or wild boar meat consumption.

      • Viruses
      • Hepatitis
  15. Molecular Detection and Distribution of Giardia duodenalis and Cryptosporidium spp. Infections in Wild and Domestic Animals in Portugal

    • Transboundary and Emerging Diseases
    • Enteric protozoan parasites Giardia duodenalis, Cryptosporidium spp., and, to a lesser extent, the ciliate Balantioides coli are responsible for severe human and animal intestinal disorders globally. However, limited information is available on the occurrence and epidemiology of these parasites in domestic, but especially wild species in Portugal. To fill this gap of knowledge, we have investigated G. duodenalis, Cryptosporidium spp., and B.

      • Parasites
      • Cryptosporidium parvum
      • Giardia lamblia
  16. Microbial Food Safety Assessment of Organic Food and Feed: Notifications in the EU RASFF during 2020–2022. A Systematic Review

    • Transboundary and Emerging Diseases
    • The presence of pathogenic bacteria in organic feed and food is a topic of current subject of study due to concerns that certain organic practices may heighten the risk of contamination and contribute to the spread of foodborne pathogens. The primary objective of this research is to analyze the main microbial contaminants exclusively associated with organic products, as reported in the literature.

      • Bacterial pathogens
      • Salmonella
  17. Molecular Characterization and Phylogenetic Analysis of Hepatitis E Virus (HEV) Strains from Pigs Farmed in Eight European Countries between 2020 and 2022

    • Transboundary and Emerging Diseases
    • In high‐income countries, the hepatitis E virus (HEV) is considered an emerging threat causing autochthonous acute hepatitis in humans, with an increased number of reported cases over the last 10 years and related increased burden of chronic hepatitis in immunocompromised and transplant patients. Pigs are the main reservoir of the HEV‐3 genotype, which is the most common in Europe, and can be transmitted to humans through the consumption of raw and undercooked pork products.

      • Viruses
      • Hepatitis
  18. Screen the unforeseen: Microbiome‐profiling for detection of zoonotic pathogens in wild rats

    • Transboundary and Emerging Diseases
    • Abstract Wild rats can host various zoonotic pathogens. Detection of these pathogens is commonly performed using molecular techniques targeting one or a few specific pathogens. However, this specific way of surveillance could lead to (emerging) zoonotic pathogens staying unnoticed. This problem may be overcome by using broader microbiome‐profiling techniques, which enable broad screening of a sample's bacterial or viral composition.

      • Viruses
      • Hepatitis
  19. Seroprevalence of Toxoplasma gondii infection in sheep and goats from different geographical regions of the world: Systematic review and meta‐analysis

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. The Toxoplasma gondii is an obligate intracellular protozoan parasite which significantly impact small ruminant productivity, international animal trade and transboundary movement of animal across the globe. The seroprevalence of T.

      • Parasites
      • Toxoplasma gondii
  20. Prevalence, main serovars and anti‐microbial resistance profiles of non‐typhoidal Salmonella in poultry samples from the Americas: A systematic review and meta‐analysis

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 5, Page 2544-2558, September 2022. Poultry and poultry-derived products such as meat and eggs are among the main sources of non-typhoidal Salmonella (NTS) transmission to humans.

      • Bacterial pathogens
      • Salmonella
  21. Dynamics and epidemiology of Toxoplasma gondii oocyst shedding in domestic and wild felids

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 5, Page 2412-2423, September 2022. Oocyst shedding in domestic and wild felids is a critical yet understudied topic in Toxoplasma gondii ecology and epidemiology that shapes human and animal disease burden.

      • Parasites
      • Toxoplasma gondii
  22. A systematic review of Toxoplasma gondii genotypes in Gallus gallus domesticus worldwide: The focus is Brazil

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 5, Page 2440-2450, September 2022. Toxoplasma gondii was initially classified in three main lineages related to its virulence: Types I, II, and III. The recombination of genes during sexual cycle in felids gut led to more than 200 genotypes, found in ToxoDB database, using 11 RFLP markers. Free-range chickens are good bioindicators of soil contamination with T. gondii oocysts.

      • Parasites
      • Toxoplasma gondii
  23. Detection of Toxoplasma gondii oocysts in soil and risk mapping in an Island environment in the Northeast of Brazil

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Toxoplasmosis is an emerging and re-emerging infectious disease that can be transmitted through a contaminated environment. Environmental contamination is an emergency health issue and determining its occurrence is fundamental to a One Health approach. In this study we addressed the extent of environmental contamination and viability of T.

      • Parasites
      • Toxoplasma gondii
  24. Monitoring of hepatitis E virus in zoo animals from Spain, 2007–2021

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Hepatitis E virus (HEV, family Hepeviridae) is an important emerging and zoonotic pathogen. In recent decades, the number of human cases of zoonotic hepatitis E has increased considerably in industrialized countries and HEV has been detected in an expanding range of mammal species.

      • Viruses
      • Hepatitis
  25. Detection of hepatitis E virus in milk: current evidence for viral excretion in a wide range of mammalian hosts

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Infection with hepatitis E virus (HEV) is common in both developing and industrialized nations. Genotypes 3 and 4 are increasingly being reported, particularly in high-income countries where the precise extent of HEV transmission via food is currently unclear.

      • Viruses
      • Hepatitis