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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 51 - 75 of 253

  1. Characterization of the emerging multidrug‐resistant Salmonella enterica serotype Kentucky ST314 in China

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Salmonella enterica serotype Kentucky (S. Kentucky) is an important Salmonella serotype with multiple sequence types (ST) with a worldwide incidence. We identified 8 STs from 180 strains of S. Kentucky, and ST314 emerged as the most commonly encountered ST. Drug susceptibility testing revealed that ST314 had multiple resistance properties, and 75.5% of the strains were resistant to three or more classes of antimicrobials.

      • Salmonella
      • Bacterial pathogens
  2. Tracing Clostridium perfringens strains along the chicken production chain from farm to slaughter by multilocus sequence typing

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. The current study is undertaken to characterize the prevalence, genotypes distribution, antibiotic resistance and genetic diversity of Clostridium perfringens (C. perfringens) collected from different stages of a chicken production chain.

      • Clostridium perfringens
      • Bacterial pathogens
  3. Long‐term surveillance for hepatitis E virus in an Italian two‐site farrow‐to‐finish swine farm

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. In humans, hepatitis E virus (HEV) is responsible for an acute enterically transmitted hepatitis, which can become chronic in immune‐compromised patients. Genotypes 3 and 4 (HEV‐3 and HEV‐4) are zoonotic, and domestic pigs and wild boar are the main reservoirs.

      • Hepatitis
      • Viruses
  4. Salmonella spp. prevalence and antimicrobial resistance in broiler chicken and turkey flocks in Canada from 2013 to 2018

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Salmonella infections are a major human health concern. In the elderly and immunocompromised, infections can be life‐threatening and may require antibiotic therapy. Where antibiotic therapy is required, antimicrobials of choice include fluoroquinolones and extended‐spectrum cephalosporins (ESC).

      • Bacterial pathogens
      • Salmonella
  5. Molecular characterization and antimicrobial resistance profiles of Salmonella Heidelberg isolates from poultry

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. In the last 10 years, Salmonella Heidelberg has been extensively isolated from poultry in several countries. In this context, molecular characterization is essential to understand whether the strains have entered the farms from a single or several sources. Thus, the aim of this study was to determine the genetic relationship and antimicrobial susceptibility of S.

      • Salmonella
      • Bacterial pathogens
  6. In vitro invasiveness and antimicrobial resistance of Salmonella enterica subspecies isolated from wild and captive reptiles

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Reptiles are carriers of Salmonella and can intermittently shed bacteria in their faeces. Contact with snakes and lizards is a source of human salmonellosis. Here, two populations of reptiles, wild and captive were surveyed for Salmonella. One hundred thirty wild‐caught reptiles were sampled for Salmonella including 2 turtle, 9 snake and 31 lizard species.

      • Salmonella
      • Bacterial pathogens
  7. Genomic features and antimicrobial resistance patterns of Shiga toxin‐producing Escherichia coli strains isolated from food in Chile

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Shiga toxin‐producing Escherichia coli (STEC) is a zoonotic pathogen that causes severe illness in humans, often associated with foodborne outbreaks. Antimicrobial resistance among foodborne E. coli has increased over the last decades becoming a public health issue.

      • Bacterial pathogens
  8. Clams and potential foodborne Toxoplasma gondii in Nunavut, Canada

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. The prevalence of Toxoplasma gondii exposure in Inuit living in Nunavut (20%) is twice that of the US (11%); however, routes of exposure for Inuit communities in North America are unclear. Exposure to T. gondii in humans has been linked with consumption of raw or undercooked shellfish that can accumulate environmentally resistant oocysts.

      • Toxoplasma gondii
      • Parasites
  9. Antimicrobial resistance clusters in commensal Escherichia coli from livestock

    • Zoonoses and Public Health
    • To combat antimicrobial resistance (AMR), policymakers need an overview of evolution and trends of AMR in relevant animal reservoirs, and livestock is monitored by susceptibility testing of sentinel organisms such as commensal E. coli. Such monitoring data are often vast and complex and generates a need for outcome indicators that summarize AMR for multiple antimicrobial classes.

      • Bacterial pathogens
  10. Trichinella britovi infection in wild boar in Portugal

    • Zoonoses and Public Health
    • Trichinella spp. infection occurs when a host ingests muscle tissue containing infective larvae (L1 stage). Wild boar meat and its products represent the second largest source of human trichinellosis worldwide. For this reason, and since that in Portugal wild boar is the most hunted large game specie, the laboratory of Technology, Quality and Food Safety (TQFS) from the University of Trás‐os‐Montes e Alto Douro created a free service to test wild boar meat for Trichinella spp.

  11. Establishment of sentinel surveillance of human clinical campylobacteriosis in Ireland

    • Zoonoses and Public Health
    • The aim of this work was the establishment of a national laboratory sentinel surveillance service for human clinical Campylobacter in Ireland. This included detailed genomic molecular epidemiology of Campylobacter for 2019. For February‐December 2019, 24 clinical microbiology laboratories in Ireland submitted all PCR/culture‐positive clinical Campylobacter spp. specimens to Public Health Laboratory (PHL) Dublin one week out of every four.

      • Campylobacter
      • Bacterial pathogens
  12. Risk of seropositivity to Coxiella burnetii in humans living in areas with endemically infected cattle: No way for specific prevention

    • Zoonoses and Public Health
    • Q fever, a zoonotic disease caused by Coxiella burnetii, is endemic among cattle in Western France. However, studies assessing the risk of human infection in such areas are lacking to date, while they may provide information about key specific preventive actions which could be advised to the human populations living with or close to cattle.

      • Bacterial pathogens
  13. Animal petting zoos as sources of Shiga toxin‐producing Escherichia coli, Salmonella and extended‐spectrum β‐lactamase (ESBL)‐producing Enterobacteriaceae

    • Zoonoses and Public Health
    • Animal petting zoos and farm fairs provide the opportunity for children and adults to interact with animals, but contact with animals carries a risk of exposure to zoonotic pathogens and antimicrobial‐resistant bacteria.

      • Salmonella
      • Staphylococcus aureus
      • Bacterial pathogens
  14. Investigation of small ruminant brucellosis among smallholder farms: The missing link in control programmes of endemic areas

    • Zoonoses and Public Health
    • Brucellosis is a neglected zoonotic infection with a worldwide distribution and high levels of endemism in some regions, including the Middle East. In Iran, sheep and goats constitute a major part of the livestock population, often kept by small‐scale farmers for their own consumption and economic purposes. This investigation aimed at characterizing the Brucella spp. and biovars circulating in sheep and goats under smallholder farming and their potential spillover across farms.

      • Bacterial pathogens
  15. Coxiella burnetii in the environment: A systematic review and critical appraisal of sampling methods

    • Zoonoses and Public Health
    • Q fever is a zoonotic disease caused by the intracellular bacterium, Coxiella burnetii. Its primary mode of transmission is by inhalation of aerosols originating from infected animals and contaminated environments. The organism has a very low infective dose, can persist in the environment for long periods of time and large outbreaks fuelled by windborne spread have been previously reported. Detection of C.

      • Bacterial pathogens
  16. Effect of antimicrobial use and production system on Campylobacter spp., Staphylococcus spp. and Salmonella spp. resistance in Spanish swine: A cross‐sectional study

    • Zoonoses and Public Health
    • Antimicrobial resistance is a worldwide public health threat; hence, current trends tend to reduce antimicrobial use in food‐producing animals and to monitor resistance in primary production.

      • Campylobacter
      • Salmonella
      • Staphylococcus aureus
      • Bacterial pathogens
  17. Epidemiology of Campylobacter jejuni in raccoons (Procyon lotor) on swine farms and in conservation areas in southern Ontario

    • Zoonoses and Public Health
    • Campylobacter is a leading cause of foodborne illness in humans worldwide. Sources of infection are often difficult to identify, and are, generally, poorly understood. Recent work suggests that wildlife may represent a source of Campylobacter for human infections. Using a repeated cross‐sectional study design, raccoons were trapped on five swine farms and five conservation areas in southern Ontario from 2011 to 2013.

      • Campylobacter
      • Bacterial pathogens
  18. Raccoons (Procyon lotor) in the Madrid region of Spain are carriers of antimicrobial‐resistant Escherichia coli and enteropathogenic E. coli

    • Zoonoses and Public Health
    • The role of wildlife in the epidemiology of antimicrobial resistance is unclear. Raccoons in North America can carry a variety of enteric bacteria, with associated antimicrobial resistance, that could infect humans and livestock. The potential for raccoons to carry these bacteria in Europe, where they are an invasive species, has not been explored.

      • Bacterial pathogens
  19. Estimates of on‐farm antimicrobial usage in turkey production in the United States, 2013–2017

    • Zoonoses and Public Health
    • With increasing concern about the emergence and spread of resistant bacteria, there is an increasing motivation to optimize antimicrobial use administrations in animal agriculture. A key component of antimicrobial stewardship is the ability to collect antimicrobial use data and ultimately use this information to assess that administrations are necessary and effective.

  20. Estimates of on‐farm antimicrobial usage in broiler chicken production in the United States, 2013–2017

    • Zoonoses and Public Health
    • Antimicrobial use is a key selective force behind the emergence of resistant bacteria. Therefore, optimizing strategies for more efficacious and targeted antimicrobial use is an essential component of efforts to combat antimicrobial resistance. To bolster stewardship programmes in animal agriculture, processes are needed for the systematic collection of on‐farm antimicrobial use data.

  21. Seroprevalence of hepatitis E virus in dogs in Switzerland

    • Zoonoses and Public Health
    • Hepatitis E virus (HEV) is the causative agent of an acute and in most cases self‐limiting hepatitis. Of the four major HEV genotypes that infect humans, genotype 3 and 4 are zoonotic and have been identified in humans but predominantly in pigs and wild boar, which are considered the main reservoirs. However, the known host range of zoonotic HEV may be increasing to comprise additional species, including companion animals.

      • Hepatitis
      • Viruses
  22. A systematic review and meta‐analysis of Toxoplasma gondii in roe deer (Capreolus capreolus) and red deer (Cervus elaphus) in Europe

    • Zoonoses and Public Health
    • The objective of this systematic review and meta‐analysis was to summarize the available knowledge on the seroprevalence of T. gondii in roe deer (Capreolus capreolus) and red deer (Cervus elaphus) in Europe. A computerized literature search of electronic databases (PubMed and CAB abstracts) was performed along with hand searches of library resources for relevant papers, books, abstracts and conference proceedings.

      • Parasites
      • Toxoplasma gondii
  23. Genotyping of Toxoplasma gondii in wild boar (Sus scrofa) in southern Italy: Epidemiological survey and associated risk for consumers

    • Zoonoses and Public Health
    • Toxoplasma gondii is a widespread protozoan parasite (phylum Apicomplexa), which causes a zoonotic parasitic disease, known as toxoplasmosis. The aim of this study was to evaluate the occurrence and genotypes of T. gondii in wild boars of southern Italy and thus to assess the risk of infection for consumers.

      • Parasites
      • Toxoplasma gondii
  24. Perception of health risks in Lao market vendors

    • Zoonoses and Public Health
    • Wet markets are a critical part of South‐East Asian culture and economy. However, their role in circulation and transmission of both endemic and emerging disease is a source of concern in a region considered a hotspot of disease emergence. In the Lao People's Democratic Republic (Lao PDR, Laos), live and dead wild animals are frequently found in wet markets, despite legislation against the bushmeat trade.

      • Viruses
      • COVID-19
  25. The occurrence of Salmonella, extended‐spectrum β‐lactamase producing Escherichia coli and carbapenem resistant non‐fermenting Gram‐negative bacteria in a backyard poultry flock environment

    • Zoonoses and Public Health
    • Increase in the number of small‐scale backyard poultry flocks in the USA has substantially increased human‐to‐live poultry contact, leading to increased public health risks of the transmission of multi‐drug resistant (MDR) zoonotic and food‐borne bacteria. The objective of this study was to detect the occurrence of Salmonella and MDR Gram‐negative bacteria (GNB) in the backyard poultry flock environment. A total of 34 backyard poultry flocks in Washington State (WA) were sampled.

      • Salmonella
      • Bacterial pathogens