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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 176 - 200 of 585

  1. Seasonal Prevalence of Shiga Toxin-Producing Escherichia coli on Pork Carcasses for Three Steps of the Harvest Process at Two Commercial Processing Plants in the United States

    • Applied and Environmental Microbiology
    • Shiga toxin-producing Escherichia coli (STEC) is a foodborne pathogen that has a significant impact on public health, with strains possessing the attachment factor intimin referred to as enterohemorrhagic E. coli (EHEC) and associated with life-threatening illnesses. Cattle and beef are considered typical sources of STEC, but their presence in pork products is a growing concern. Therefore, carcasses (n = 1,536) at two U.S.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  2. Occurrence of ‘gang of five’ Shiga toxin‐producing Escherichia coli (STEC) serogroups on Belgian dairy cattle farms by overshoe sampling

    • Letters in Applied Microbiology
    • Shiga toxin‐producing Escherichia coli (STEC) are foodborne pathogens responsible for global outbreaks. This study was conducted to investigate the occurrence of ‘gang of five’ STEC serogroups (O26, O103, O111, O145, O157) on Belgian dairy cattle farms by overshoe (OVS) sampling, and to evaluate the presence of virulence genes in the obtained isolates.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  3. Effects of Antimicrobial Interventions on Indicator Organisms during Beef Slaughter and Dressing

    • Journal of Food Protection
    • Beef slaughter establishments employ many different interventions to help minimize occurrence of pathogens in their products. This study explored the effectiveness of various common interventions on microbial load using the results of the Beef-Veal Carcass Baseline Survey conducted in 2014–2015. For that baseline, FSIS analyzed swab samples taken from 1,135 carcasses at 139 establishments.

      • Salmonella
      • Bacterial pathogens
  4. Complete Genome Sequence of a Shiga Toxin-Producing Escherichia coli O26:H11 Strain (Sequence Type 21) and Two Draft Genome Sequences of Listeria monocytogenes Strains (Clonal Complex 1 [CC1] and CC59) Isolated from Fresh Produce in Germany

    • Microbiology Resource Announcements
    • The complete genome sequence of a Shiga toxin-producing Escherichia coli (STEC) O26:H11 strain, MBT-5 (sequence type 21 [ST21], stx1a, stx2a, eae, ehxA), and two draft genome sequences of Listeria monocytogenes strains MBT-6 and MBT-7 belonging to the virulent sequence types 1 (ST1, clonal complex 1 [CC1]) and 59 (ST59, CC59), respectively, were determined. The strains were isolated in 2015 from ready-to-eat mixed greens in Germany.

      • Listeria monocytogenes
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  5. Shiga toxin-producing Escherichia coli (STEC) in bovine meat and meat products over the last 15 years in Brazil: A systematic review and meta-analysis

    • Meat Science
    • Author(s): Débora Cristina Sampaio de Assis, Thaís Michelle Liziere da Silva, Rommel Furst Brito, Lorraine Cássia Gonçalves da Silva, William Gustavo Lima, Júlio César Moreira Brito

      • Bacterial pathogens
  6. Editorial: Recent Advances in Understanding the Pathogenesis of Shiga Toxin-Producing Shigella and Escherichia coli

    • Frontiers in Cellular and Infection Microbiology
    • Shiga toxin-producing Shigella species and Escherichia coli (STEC) are pathogenic bacteria that cause the bloody diarrheal diseases bacillary dysentery (Shigella spp.) and hemorrhagic colitis (STEC). Unfortunately, patients with these diarrheal diseases are at risk for developing potentially lethal extraintestinal complications such as hemolytic uremic syndrome (HUS), resulting in acute renal failure, and neurological sequelae such as seizures, cortical blindness, and coma. Shigella spp.

      • Bacterial pathogens
      • Shigella
  7. Label-Free Immunoassay for Multiplex Detections of Foodborne Bacteria in Chicken Carcass Rinse with Surface Plasmon Resonance Imaging

    • Foodborne Pathogens and Disease
    • The frequent outbreaks of foodborne pathogens have stimulated the demand of biosensors capable of rapid and multiplex detection of contaminated food. In this study, surface plasmon resonance imaging (SPRi) was used in simultaneous label-free detection of multiple foodborne pathogens, mainly Salmonella spp. and Shiga-toxin producing Escherichia coli (STEC), in commercial chicken carcass rinse. The antibodies were immobilized on the same SPRi sensor chip as a label-free immunoassay.

  8. Investigation of Shiga Toxin-Producing Escherichia coli in Groundwater, River Water, and Fecal Sources in the Kathmandu Valley, Nepal

    • Water, Air, & Soil Pollution
    • Shiga toxin-producing Escherichia coli (STEC) is one of the most commonly heard sources of foodborne outbreaks but presently lacks studies of in the Kathmandu Valley. This study explored the presence of STEC in river water (n = 17), groundwater (n = 83), feces (n = 50), and manure (n = 20) in the Kathmandu Valley, Nepal. Samples that were confirmed to be E.

      • Bacterial pathogens
  9. Quantitative risk assessment of haemolytic uremic syndrome associated with beef consumption in Argentina

    • PLOS ONE
    • by Victoria Brusa, Magdalena Costa, Nora L. Padola, Analía Etcheverría, Fernando Sampedro, Pablo S. Fernandez, Gerardo A. Leotta, Marcelo L. Signorini

      • Bacterial pathogens
  10. Clones of enterotoxigenic and Shiga toxin-producing Escherichia coli implicated in swine enteric colibacillosis in Spain and rates of antibiotic resistance

    • Veterinary Microbiology
    • Shiga toxin–producing E. coli (STEC) and enterotoxigenic E. coli (ETEC) are the main agents of swine colibacillosis, an infectious disease which implies important economic losses. We characterized here 186 diarrheagenic E. coli from Spanish industrial pig farms (2005-2017) to know which clones were involved in this syndrome, and the rates of antibiotic resistance.

      • Bacterial pathogens
  11. Microbiological Survey of Wheat Flour Sold at Retail in Canada, 2018-2019

    • Journal of Food Protection
    • Following two O121 STEC outbreaks linked to wheat flour, this study was conducted to gain baseline information on the occurrence of bacterial pathogens and levels of indicator organisms in wheat flour in Canada. A total of 347 pre-packaged wheat flour samples were analyzed for Salmonella spp., Shiga Toxin-Producing Escherichia coli (STEC), Listeria monocytogenes ( L. monocytogenes ) , aerobic colony count (ACC), total coliforms, and generic Escherichia coli ( E. coli ) .

      • Listeria monocytogenes
      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  12. Shiga Toxin–Producing Escherichia coli Infections Associated With Romaine Lettuce—United States, 2018

    • Clinical Infectious Diseases
    • Background Produce-associated outbreaks of Shiga toxin–producing Escherichia coli (STEC) were first identified in 1991. In April 2018, New Jersey and Pennsylvania officials reported a cluster of STEC O157 infections associated with multiple locations of a restaurant chain. The Centers for Disease Control and Prevention (CDC) queried PulseNet, the national laboratory network for foodborne disease surveillance, for additional cases and began a national investigation.

      • Bacterial pathogens
  13. Whole-Genome Analysis of a Shiga Toxin-Producing Escherichia coli O103:H2 Strain Isolated from Cattle Feces

    • Microbiology Resource Announcements
    • Shiga toxin-producing Escherichia coli (STEC) serotype O103 is one of the primary pathogenic contaminants of beef products, contributing to several foodborne outbreaks in recent years. Here, we report the whole-genome sequence of a STEC O103:H2 strain isolated from cattle feces that contains a locus of enterocyte effacement (LEE) pathogenicity island.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  14. FilmArray GI-panel performance for the rapid and multiple detection of gastrointestinal microorganisms in foodborne illness outbreaks in Shenzhen during 2018–2019

    • Infection, Genetics and Evolution
    • Author(s): Pengwei Hu, Chuyun Liu, Jiawen Ruan, Meng Yuan, Changyan Ju, Yanping Ma, Yueming Yuan, Hui Chen, Muhua Yu, Yongxiang Duan

  15. Pathogenic potential of Escherichia coli O157 and O26 isolated from young Belgian dairy calves by recto‐anal mucosal swab culturing

    • Journal of Applied Microbiology
    • Aims The purpose of this study was to investigate the occurrence of E. coli O157 and O26 on Belgian dairy cattle farms, the presence of virulence genes in the confirmed isolates, and the association of E. coli O26 presence with calf diarrhea. Methods and Results In total, 233 recto‐anal mucosal swabs (RAMS) were obtained from healthy and diarrheic dairy calves on three farms, each alternately visited three consecutive times. RAMS were analyzed for presence of E.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  16. Comparative Transcriptomics of Shiga Toxin-Producing and Commensal Escherichia coli and Cytokine Responses in Colonic Epithelial Cell Culture Infections

    • Frontiers in Cellular and Infection Microbiology
    • Ingestion of Shiga toxin-producing Escherichia coli (STEC) can result in a range of illness severity from asymptomatic to hemorrhagic colitis and death; thus risk assessment of STEC strains for human pathogenicity is important in the area of food safety. Illness severity depends in part on the combination of virulence genes carried in the genome, which can vary between strains even of identical serotype.

      • Bacterial pathogens
  17. A Shiga Toxin-Encoding Prophage Recombination Event Confounds the Phylogenetic Relationship Between Two Isolates of Escherichia coli O157:H7 From the Same Patient

    • Frontiers in Microbiology
    • We compared genomes from multiple isolations of Shiga toxin-producing Escherichia coli (STEC) O157:H7 from the same patient, in cases notified to Public Health England (PHE) between 2015 and 2019. There were 261 cases where multiple isolates were sequenced from the same patient comprising 589 isolates.

      • Bacterial pathogens
      • Escherichia coli O157:H7
  18. Analysis Shiga Toxin-Encoding Bacteriophage in a Rare Strain of Shiga Toxin-Producing Escherichia coli O157:H7 stx2a/stx2c

    • Frontiers in Microbiology
    • In December 2015, six cases of Shiga toxin (Stx)-producing Escherichia coli (STEC) O157:H7 stx2a/stx2c phage type (PT) 24 were identified by the national gastrointestinal disease surveillance system at Public Health England (PHE). Frozen grated coconut imported from India was implicated as the vehicle of infection. Short and long read sequencing data were interrogated for genomic markers to provide evidence that the outbreak strain was from an imported source.

      • Escherichia coli O157:H7
      • Bacterial pathogens
  19. The effects of environmental factors on the prevalence and diversity of bacteriophages lytic against the top six non‐O157 Shiga toxin‐producing Escherichia coli on an organic farm

    • Journal of Food Safety
    • The research showed that ruminant animal is the primary factor contributing to the prevalence of the STEC‐infecting phages on the organic farm in this study. Among environmental factors, high rain precipitation is likely to facilitate phage distribution in the surrounding environment of the farm. Most importantly, the presence of these phages has a negative correlation with their STEC hosts.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  20. Coinfection with Porcine Circovirus Type 2 (PCV2) and Streptococcus suis Serotype 2 (SS2) Enhances the Survival of SS2 in Swine Tracheal Epithelial Cells by Decreasing Reactive Oxygen Species Production

    • Infection and Immunity
    • Porcine circovirus type 2 (PCV2) and Streptococcus suis serotype 2 (SS2) clinical coinfection cases have been frequently detected. The respiratory epithelium plays a crucial role in host defense against a variety of inhaled pathogens. Reactive oxygen species (ROS) are involved in killing of bacteria and host immune response.

      • Bacterial pathogens
  21. Occurrence, pathotypes, and antimicrobial resistance profiles of diarrheagenic Escherichia coli strains in animal source food products from public markets in Mashhad, Iran

    • Food Control
    • Author(s): Neda Fallah, Mehran Ghaemi, Kiarash Ghazvini, Mehrnaz Rad, Abdollah Jamshidi

      • Bacterial pathogens
  22. Acid resistance of E. coli O157:H7 and O26:H11 exposure to lactic acid revealed by transcriptomic analysis

    • LWT
    • Author(s): Lanlin Yu, Su Zhang, Yuanyuan Xu, Xiaoyu Mi, Tong Xing, Jiaolong Li, Lin Zhang, Feng Gao, Yun Jiang

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  23. The Site-Specific Recombination System of the Escherichia coli Bacteriophage Φ24B

    • Frontiers in Microbiology
    • Stx bacteriophages are members of the lambdoid group of phages and are responsible for Shiga toxin (Stx) production and the dissemination of Shiga toxin genes (stx) across shigatoxigenic Escherichia coli (STEC). These toxigenic bacteriophage hosts can cause life-threatening illnesses, and Stx is the virulence determinant responsible for the severe nature of infection with enterohemorrhagic E. coli, a subset of pathogenic STEC.

      • Bacterial pathogens
  24. Genetic and Phenotypic Factors Associated with Persistent Shedding of Shiga Toxin-Producing Escherichia coli by Beef Cattle

    • Applied and Environmental Microbiology
    • Shiga toxin-producing Escherichia coli (STEC) is a leading cause of foodborne infections. Cattle are an important STEC reservoir, although little is known about specific pathogen traits that impact persistence in the farm environment. Hence, we sought to evaluate STEC isolates recovered from beef cattle in a single herd in Michigan. To do this, we collected fecal grabs from 26 cattle and resampled 13 of these animals at 3 additional visits over a 3-month period.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  25. Shiga Toxin-Producing Escherichiacoli in Feces of Finisher Pigs: Isolation, Identification and Public Health Implications of Major and Minor Serogroups

    • Journal of Food Protection
    • Shiga toxin-producing Escherichia coli (STEC) are major foodborne human pathogens that cause mild to hemorrhagic colitis, which could lead to complications of hemolytic uremic syndrome.  Seven serogroups, O26, O45, O103, O111, O121, O145 and O157, account for the majority of the STEC illnesses in the US.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens