An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 201 - 225 of 586

  1. Shiga Toxin-Producing Escherichiacoli in Feces of Finisher Pigs: Isolation, Identification and Public Health Implications of Major and Minor Serogroups

    • Journal of Food Protection
    • Shiga toxin-producing Escherichia coli (STEC) are major foodborne human pathogens that cause mild to hemorrhagic colitis, which could lead to complications of hemolytic uremic syndrome.  Seven serogroups, O26, O45, O103, O111, O121, O145 and O157, account for the majority of the STEC illnesses in the US.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  2. Reducing Pathogenic Escherichia coli Surrogates on Fresh Beef Cuts by Water-Reducing Antimicrobial Interventions

    • Journal of Food Protection
    • Water use for antimicrobial intervention application for beef harvest has come under increased scrutiny in recent years in an effort to enhance water conservation during beef harvest and fabrication. This study was conducted to determine the efficacy of beef safety interventions for reducing surrogates of the Shiga toxin-producing Escherichia coli (STEC) on beef cuts while lowering intervention-purposed water use for a Small or Very Small beef establishment.

      • Bacterial pathogens
  3. Recovery Rate of Cells of the Seven Regulated Serogroups of Shiga Toxin-Producing Escherichia coli from Raw Veal Cutlets, Ground Veal, and Ground Beef from Retail Stores in the Mid-Atlantic Region of the United States

    • Journal of Food Protection
    • A total of 482 veal cutlet, 555 ground veal, and 540 ground beef samples were purchased from retail establishments in the Mid-Atlantic region of the U.S. over a non-contiguous, two-year period between 2014 and 2017. Samples (325 g each) were individually enriched and screened via real-time PCR for all seven regulated serogroups of Shiga toxin-producing Escherichia coli (STEC).

      • Bacterial pathogens
  4. Prevalence of Enteropathogens and Virulence Traits in Brazilian Children With and Without Diarrhea

    • Frontiers in Cellular and Infection Microbiology
    • The use of molecular diagnostics for pathogen detection in epidemiological studies have allowed us to get a wider view of the pathogens associated with diarrhea, but the presence of enteropathogens in asymptomatic individuals has raised several challenges in understanding the etiology of diarrhea, and the use of these platforms in clinical diagnosis as well.

      • Bacterial pathogens
      • Salmonella
      • Yersinia
  5. The Role of Escherichia coli Shiga Toxins in STEC Colonization of Cattle

    • Toxins
    • Many cattle are persistently colonized with Shiga toxin-producing Escherichia coli (STEC) and represent a major source of human infections with human-pathogenic STEC strains (syn. enterohemorrhagic E. coli (EHEC)). Intervention strategies most effectively protecting humans best aim at the limitation of bovine STEC shedding. Mechanisms enabling STEC to persist in cattle are only partialy understood.

      • Bacterial pathogens
  6. Draft Genome Sequences of 12 Shiga Toxin-Producing Escherichia coli Strains Isolated from Dairy Cattle in Portugal

    • Microbiology Resource Announcements
    • Shiga toxin-producing Escherichia coli (STEC) is a foodborne pathogen transmitted from animals to humans through contaminated food. Cattle are the main reservoir of STEC, but their genetic diversity is still poorly characterized, especially regarding strains isolated in Portugal. We therefore present the draft genomic sequences of 12 STEC strains isolated from cattle in the north of Portugal.

      • Bacterial pathogens
  7. Efficacy of antimicrobial interventions in reducing Salmonella enterica, Shiga toxin-producing Escherichia coli, Campylobacter, and Escherichia coli biotype I surrogates on non-chilled and chilled, skin-on and skinless pork

    • Meat Science
    • Author(s): L.C. Eastwood, T.M. Taylor, J.W. Savell, K.B. Gehring, A.N. Arnold

      • Campylobacter
      • Salmonella
      • Bacterial pathogens
  8. Thermal Resistance of Single Strains of Shiga Toxin-Producing Escherichia coli O121:H19 and O157:H7 Based on Culture Preparation Method and Osmolyte-Reduced Water Activity

    • Journal of Food Protection
    • Pathogen thermal resistance studies on low-water activity foods (LWAF) use a variety of methods to inoculate food, as well as strategies to reduce water activity, which can influence thermal resistance observations.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  9. Host response to the Subtilase cytotoxin produced by locus of enterocyte effacement (LEE)‐negative Shiga‐toxigenic Escherichia coli (STEC)

    • Microbiology and Immunology
    • Shiga‐toxigenic Escherichia coli (STEC) is a major bacterium responsible for disease resulting from foodborne infection, including bloody diarrhea and hemolytic uremic syndrome (HUS). STEC produces important virulence factors such as Shiga toxin (Stx) 1 and/or 2. In the STEC family, some Locus for Enterocyte Effacement (LEE)‐negative STEC produce two different types of cytotoxins, Stx2 and Subtilase cytotoxin (SubAB).

      • Bacterial pathogens
  10. Association between Shiga Toxin–Producing Escherichia coli O157:H7 stx Gene Subtype and Disease Severity, England, 2009–2019

    • Emerging Infectious Diseases
    • L. Byrne et al. Signs and symptoms of Shiga toxin–producing Escherichia coli (STEC) serogroup O157:H7 infection range from mild gastrointestinal to bloody diarrhea and hemolytic uremic syndrome (HUS). We assessed the association between Shiga toxin gene (stx) subtype and disease severity for »3,000 patients with STEC O157:H7 in England during 2009–2019.

      • Bacterial pathogens
      • Escherichia coli O157:H7
  11. Virulence Characteristics and Antibiotic Resistance Profiles of Shiga Toxin-Producing Escherichia coli Isolates from Diverse Sources

    • Antibiotics
    • Shiga toxin-producing Escherichia coli (STEC) is an enteric pathogen that causes several gastrointestinal ailments in humans across the world. STEC’s ability to cause ailment is attributed to the presence of a broad range of known and putative virulence factors (VFs) including those that encode Shiga toxins. A total of 51 E.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  12. Core and Accessory Genome Comparison of Australian and International Strains of O157 Shiga Toxin-Producing Escherichia coli

    • Frontiers in Microbiology
    • Shiga toxin-producing Escherichia coli (STEC) is a foodborne pathogen, and serotype O157:H7 is typically associated with severe disease. Australian STEC epidemiology differs from many other countries, as severe outbreaks and HUS cases appear to be more often associated with non-O157 serogroups. It is not known why Australian strains of O157 STEC might differ in virulence to international strains. Here we investigate the reduced virulence of Australian strains.

      • Bacterial pathogens
  13. Are Reservoirs and Transmission Routes the Same or Different Between O157 and Non-O157 Shiga Toxin–Producing Escherichia coli?

    • Clinical Infectious Diseases
    • To the Editor—We read the article by Franz et al [1] with great interest. They performed a pan-genome, spatio-temporal, phylogenetic study of Escherichia coli isolates of O157:H7, a major serotype of Shiga toxin–producing E. coli (STEC), and concluded that E. coli O157:H7 has spread globally by the transportation of cattle.

      • Bacterial pathogens
  14. Comparison between the real-time PCR and Crystal Diagnostic Xpress immunoassay-based method for detecting Salmonella and Shiga toxin-producing Escherichia coli (STEC) in the air of beef slaughter establishments

    • Journal of Food Protection
    • The aim of this study was to compare the effectiveness of real-time Polymerase Chain Reaction PCR (RT-PCR) molecular method and Crystal Diagnostic Xpress  ( CDx) immunoassay for detecting  Salmonella  and STEC in air samples collected from abattoirs in Texas. A total of 70 air samples were collected from two small and two large plants in the spring and summer season using a wall wetted cyclone (WWC) air sampler.

      • Salmonella
      • Bacterial pathogens
  15. Survival of common foodborne pathogens on dried apricots made with and without sulfur dioxide treatment

    • Food Control
    • Author(s): Zhuosheng Liu, Chao Liao, Kayla Golson, Shelley Phillips, Luxin Wang

  16. An interlaboratory study on the detection methods for enterotoxigenic Escherichia coli in vegetables using enterotoxin gene screening and selective agars for ETEC-specific isolation

    • International Journal of Food Microbiology
    • Author(s): Yukiko Hara-Kudo, Kayoko Ohtsuka, Noriko Konishi, Takako Yoshida, Kaori Iwabuchi, Takahiro Hiratsuka, Yuhki Nagai, Keiko Kimata, Hiroyuki Wada, Takumiko Yamazaki, Akihiko Tsuchiya, Tetsuya Mori, Shunichi Inagaki, Shogo Shiraishi, Jun Terajima

      • Bacterial pathogens
  17. Modeling the Effect of Simultaneous Use of Allyl Isothiocyanate and Cinnamaldehyde on High Hydrostatic Pressure Inactivation of Uropathogenic and Shiga Toxin‐Producing Escherichia coli in Ground Chicken

    • Journal of the Science of Food and Agriculture
    • Background Combination of high pressure processing (HPP) and antimicrobials is a well‐known approach to enhance the microbiological safety of foods. However, few researchers have applied multiple antimicrobials simultaneously with HPP, which could be an additional hurdle for microbial inactivation.

      • Bacterial pathogens
  18. Thermal inactivation of Salmonella, Shiga toxin-producing Escherichia coli, Listeria monocytogenes, and a surrogate (Pediococcus acidilactici) on raisins, apricot halves, and macadamia nuts using vacuum-steam pasteurization

    • International Journal of Food Microbiology
    • Author(s): Jennifer C. Acuff, Jian Wu, Claire Marik, Kim Waterman, Daniel Gallagher, Haibo Huang, Robert C. Williams, Monica A. Ponder

      • Listeria monocytogenes
      • Bacterial pathogens
      • Salmonella
  19. Multiplex PCR Assays for the Detection of One Hundred and Thirty Seven Serogroups of Shiga Toxin-Producing Escherichia coli Associated With Cattle

    • Frontiers in Cellular and Infection Microbiology
    • Escherichia coli carrying prophage with genes that encode for Shiga toxins are categorized as Shiga toxin-producing E. coli (STEC) pathotype. Illnesses caused by STEC in humans, which are often foodborne, range from mild to bloody diarrhea with life-threatening complications of renal failure and hemolytic uremic syndrome and even death, particularly in children. As many as 158 of the total 187 serogroups of E.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  20. Utilization of Clustered Regularly Interspaced Short Palindromic Repeats to Genotype Escherichia coli Serogroup O80

    • Frontiers in Microbiology
    • The hypervariable nature of clustered regularly interspaced short palindromic repeats (CRISPRs) makes them valuable biomarkers for subtyping and epidemiological investigation of Escherichia coli. Shiga toxin-producing E. coli (STEC) serogroup O80 is one hybrid pathotype that is emerging recently in Europe and is involved in hemolytic uremic syndrome with bacteremia. However, whether STEC O80 strains can be genotyped using CRISPR has not been evaluated.

      • Bacterial pathogens
  21. Occurrence, virulence genes, and antimicrobial profiles of Escherichia coli O157 isolated from ruminants slaughtered in Al Ain, United Arab Emirates

    • BMC Microbiology
    • Shiga toxin-producing Escherichia coli (STEC) is a major source of food-borne illness around the world. E. coli O157 has been widely reported as the most common STEC serogroup and has emerged as an important ente...

      • Bacterial pathogens
  22. Application of MS bacteriophages on contaminated trimmings reduces Escherichia coli O157 and non-O157 in ground beef

    • Meat Science
    • Author(s): E.L. Shebs-Maurine, E.S. Torres, Y. Yeh-Parker, A.S. de Mello

      • Bacterial pathogens
  23. Pre-harvest treatment for reduction of foodborne pathogens and microbial load on tomatoes

    • Food Control
    • Author(s): Tong Zhao, Pingsheng Ji, Govindaraj Dev Kumar

  24. Investigation on the Evolution of Shiga Toxin-Converting Phages Based on Whole Genome Sequencing

    • Frontiers in Microbiology
    • Bacteriophages are pivotal elements in the dissemination of virulence genes. The main virulence determinants of Shiga Toxin producing E. coli, Shiga Toxins (Stx), are encoded by genes localized in the genome of lambdoid bacteriophages. Stx comprise two antigenically different types, Stx1 and Stx2, further divided into subtypes.

      • Bacterial pathogens
  25. Survival of Listeria monocytogenes and shigatoxigenic Escherichia coli during the production and aging of farmstead-style cheese

    • International Dairy Journal
    • Author(s): Dhafer Alshaibani, Robson A.M. Machado, Beth L. Calder, Jennifer J. Perry

      • Listeria monocytogenes
      • Bacterial pathogens