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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 76 - 100 of 191

  1. Use of a Latent Class Analysis in the Diagnosis of Chronic Chagas Disease in the Washington Metropolitan Area

    • Clinical Infectious Diseases
    • Background The diversity of individuals at risk for Trypanosoma cruzi infection in the United States poses challenges for diagnosis. We evaluated the diagnostic accuracy of Food and Drug Administration (FDA)-cleared tests in the Washington Metropolitan area (WMA). Methods In total, 1514 individuals were evaluated (1078 from Mexico, Central and northern South America [TcI-predominant areas], and 436 from southern South America [TcII/V/VI-predominant areas]).

  2. Geographic Shifts in Antibacterial Drug Clinical Trial Enrollment: Implications for Generalizability

    • Clinical Infectious Diseases
    • Background As drug development has globalized, trials have increasingly enrolled participants from all parts of the world rather than just the United States and Western Europe. For antibacterial drug trials, understanding enrollment trends and regional differences is important for generalizability considerations.

      • Staphylococcus aureus
      • Bacterial pathogens
  3. Predicted Impact of COVID-19 on Neglected Tropical Disease Programs and the Opportunity for Innovation

    • Clinical Infectious Diseases
    • Due to the COVID-19 pandemic, many key neglected tropical disease (NTD) activities have been postponed. This hindrance comes at a time when the NTDs are progressing towards their ambitious goals for 2030. Mathematical modelling on several NTDs, namely gambiense sleeping sickness, lymphatic filariasis, onchocerciasis, schistosomiasis, soil-transmitted helminthiases (STH), trachoma, and visceral leishmaniasis, shows that the impact of this disruption will vary across the diseases.

  4. Investigator-initiated Randomized Controlled Trials in Infectious Diseases: Better Value for Money for Registration Trials of New Antimicrobials

    • Clinical Infectious Diseases
    • Randomized controlled trials (RCTs) conducted by the industry are expensive, especially trials conducted for registration of new drugs for multidrug-resistant (MDR) bacteria. Lower-cost investigator-initiated trials have recently been successful in recruiting patients with severe infections caused by MDR bacteria.

      • Heavy Metals
      • Chemical contaminants
  5. Sparganosis (Spirometra) in Europe in the Molecular Era

    • Clinical Infectious Diseases
    • Sparganosis is a relatively neglected foodborne and waterborne disease caused by species of the tapeworm genus Spirometra, the global distribution of which has not been sufficiently recognized. Known mainly as a zoonosis of East Asia, its species are native to all inhabited continents including Europe. Spirometra has been reported from numerous wildlife species from 17 European countries, and a critical review confirmed 17 autochthonous and 8 imported human clinical cases.

  6. The Changing Landscape of Pediatric Viral Enteropathogens in the Post–Rotavirus Vaccine Era

    • Clinical Infectious Diseases
    • Background Acute gastroenteritis (AGE) is a common reason for children to receive medical care. However, the viral etiology of AGE illness is not well described in the post–rotavirus vaccine era, particularly in the outpatient (OP) setting.

      • Viruses
      • Norovirus
  7. Association Between the Use of Antibiotics, Antivirals, and Hospitalizations Among Patients With Laboratory-confirmed Influenza

    • Clinical Infectious Diseases
    • Background Clinicians may prescribe antibiotics to influenza patients at high risk for bacterial complications. We explored the association between antibiotics, antivirals, and hospitalization among people with influenza. Methods A retrospective cohort study of patients with confirmed influenza with encounters during January 2011–January 2019 was conducted using data from the Veterans Affairs Informatics and Computing Infrastructure (VINCI).

  8. Reply to Aung et al

    • Clinical Infectious Diseases
    • To the Editor—Symptomatic malaria is predominantly a disease of childhood in areas of higher transmission (ie, much of sub-Saharan Africa). Most cases of severe malaria occur in children aged <5 years. In these regions, both malaria and sepsis are major causes of childhood death, yet the clinical distinction between the 2 is difficult, particularly if there is no obvious focus of infection [1].

      • Salmonella
      • Bacterial pathogens
  9. Economic Evaluations of New Antibiotics: The High Potential Value of Reducing Healthcare Transmission Through Decolonization

    • Clinical Infectious Diseases
    • Background Antibiotics designed to decolonize carriers of drug-resistant organisms could offer substantial population health benefits, particularly if they can help avert outbreaks by interrupting person-to-person transmission chains. However, cost effectiveness of an antibiotic is typically evaluated only according to its benefits to recipients, which can be difficult to demonstrate for carriers of an organism that may not pose an immediate health threat to the carrier.

      • Bacterial pathogens
  10. Environmental Contamination of Contact Precaution and Non-Contact Precaution Patient Rooms in Six Acute Care Facilities

    • Clinical Infectious Diseases
    • Background Environmental contamination is an important source of hospital multidrug-resistant organism (MDRO) transmission. Factors such as patient MDRO contact precautions (CP) status, patient proximity to surfaces, and unit type likely influence MDRO contamination and bacterial bioburden levels on patient room surfaces.

      • Staphylococcus aureus
      • Bacterial pathogens
  11. Simulated Adoption of 2019 Community-Acquired Pneumonia Guidelines Across 114 Veterans Affairs Medical Centers: Estimated Impact on Culturing and Antibiotic Selection in Hospitalized Patients

    • Clinical Infectious Diseases
    • Background The 2019 American Thoracic Society/Infectious Diseases Society of America guidelines for community-acquired pneumonia (CAP) revised recommendations for culturing and empiric broad-spectrum antibiotics. We simulated guideline adoption in Veterans Affairs (VA) inpatients.

      • Staphylococcus aureus
      • Bacterial pathogens
  12. Birth Cohort Studies: Toward Understanding Protective Immunity to Human Noroviruses

    • Clinical Infectious Diseases
    • Norovirus is the most common etiology of diarrheal illness globally, causing both sporadic and epidemic infection. It is responsible for more than 200 000 deaths annually, primarily in children under 5 years of age in developing countries, and economic costs are estimated to be more than $64 billion annually [1, 2].

      • Norovirus
      • Viruses
  13. Homotypic and Heterotypic Protection and Risk of Reinfection Following Natural Norovirus Infection in a Highly Endemic Setting

    • Clinical Infectious Diseases
    • Background Norovirus is a leading cause of acute gastroenteritis worldwide, yet there is limited information on homotypic or heterotypic protection following natural infection to guide vaccine development. Methods A total of 6020 stools collected from 299 Peruvian children between 2010 and 2014 were tested by norovirus real-time reverse-transcription polymerase chain reaction followed by sequence-based genotyping.

      • Norovirus
      • Viruses
  14. The Effect of Pregnancy on the Pharmacokinetics of Total and Unbound Dolutegravir and Its Main Metabolite in Women Living With Human Immunodeficiency Virus

    • Clinical Infectious Diseases
    • Background Pharmacokinetic and efficacy data on dolutegravir in pregnant women living with human immunodeficiency virus (HIV) are still limited but needed to support its use as one of the preferred antiretroviral agents.

  15. Infection Control in the Era of Antimicrobial Resistance in China: Progress, Challenges, and Opportunities

    • Clinical Infectious Diseases
    • More than 3 decades have passed since infection control was implemented nationwide in China in 1986. A comprehensive set of regulations and guidelines has been developed, and almost all hospitals have established infection control teams. However, compliance is variable and is usually suboptimal.

      • Bacterial pathogens
      • Staphylococcus aureus
  16. In Vitro Activity of Imipenem/Relebactam Against Enterobacteriaceae Isolates Obtained from Intra-abdominal, Respiratory Tract, and Urinary Tract Infections in China: Study for Monitoring Antimicrobial Resistance Trends (SMART), 2015–2018

    • Clinical Infectious Diseases
    • Background Considering the increasing incidence of carbapenem-resistant Enterobacteriaceae in China, this study aimed to establish the in vitro effectiveness of imipenem/relebactam (IMI/REL) on clinical Enterobacteriaceae isolates derived from intra-abdominal infections (IAIs), respiratory tract infections (RTIs), and urinary tract infections (UTIs) in China between 2015 and 2018.

      • Bacterial pathogens
  17. Reply to Evans et al

    • Clinical Infectious Diseases
    • TO THE EDITOR—We appreciate the letter from Drs Evans, Roselle, and Kralovic who lead the National Veterans Affairs (VA) Infectious Disease Service [1]. As VA investigators and hospital epidemiologists, we have worked together collegially for years.

      • Heavy Metals
      • Chemical contaminants
  18. Susceptibility to Hepatitis A Virus Infection in the United States, 2007–2016

    • Clinical Infectious Diseases
    • Background Despite national immunization efforts, including universal childhood hepatitis A (HepA) vaccination recommendations in 2006, hepatitis A virus (HAV)–associated outbreaks have increased in the United States. Unvaccinated or previously uninfected persons are susceptible to HAV infection, yet the susceptibility in the US population is not well known.

      • Hepatitis
      • Viruses
  19. Evidence From a Multistate Cohort: Enrollment in Affordable Care Act Qualified Health Plans’ Association With Viral Suppression

    • Clinical Infectious Diseases
    • Background Healthcare delivery changes associated with viral suppression (VS) could contribute to the United States’ “Ending the HIV Epidemic” (EtHE) initiative. This study aims to determine whether Qualified Health Plans (QHPs) purchased by AIDS Drug Assistance Programs (ADAPs) are associated with VS for low-income people living with HIV (PLWH) across 3 states. Methods A multistate cohort of ADAP clients eligible for ADAP-funded QHPs were studied (2014–2015).

  20. Engagement in Care, Viral Suppression, Drug Resistance, and Reasons for Nonengagement After Home-Based Same-Day Antiretroviral Therapy Initiation in Lesotho: A Two-Year Follow-up of the CASCADE Trial

    • Clinical Infectious Diseases
    • Background The CASCADE trial showed that compared with usual care (UC), offering same-day (SD) antiretroviral therapy (ART) during home-based human immunodeficiency virus testing improved engagement in care and viral suppression 12 months after diagnosis. However, questions remain regarding long-term outcomes and the risk of propagating drug resistance.

  21. Lefamulin: A Novel Semisynthetic Pleuromutilin Antibiotic for Community-acquired Bacterial Pneumonia

    • Clinical Infectious Diseases
    • Community-acquired bacterial pneumonia (CABP) remains a significant cause of morbidity and mortality worldwide. Antimicrobial resistance, including in pathogens that cause CABP, continues to spread at an alarming rate. Because of these factors, the development of new antibiotic classes is urgently needed. Lefamulin, previously known as BC-3781, is a semisynthetic pleuromutilin antibiotic that was approved by the Food and Drug Administration for the treatment of CABP in adults.

  22. Toward Improving Interventions Against Toxoplasmosis by Identifying Routes of Transmission Using Sporozoite-specific Serological Tools

    • Clinical Infectious Diseases
    • Background Horizontal transmission of Toxoplasma gondii occurs primarily via ingestion of environmental oocysts or consumption of undercooked/raw meat containing cyst-stage bradyzoites. The relative importance of these 2 transmission routes remains unclear. Oocyst infection can be distinguished from bradyzoite infection by identification of immunoglobulin G (IgG) antibodies against T. gondii embryogenesis-related protein (TgERP).

      • Toxoplasma gondii
      • Parasites
  23. Temporal and Genotypic Associations of Sporadic Norovirus Gastroenteritis and Reported Norovirus Outbreaks in Middle Tennessee, 2012–2016

    • Clinical Infectious Diseases
    • Background In the United States, surveillance of norovirus gastroenteritis is largely restricted to outbreaks, limiting our knowledge of the contribution of sporadic illness to the overall impact on reported outbreaks. Understanding norovirus transmission dynamics is vital for improving preventive measures, including norovirus vaccine development.

      • Norovirus
      • Viruses
  24. Cannabis Use and Plasma Human Immunodeficiency Virus (HIV) RNA Levels in Patients Coinfected With HIV and Hepatitis C Virus Receiving Antiretroviral Therapy: Data From the ANRS CO13 HEPAVIH Cohort

    • Clinical Infectious Diseases
    • To the Editor—Chaillon et al [1] reported interesting results on the effect of cannabis use on the human immunodeficiency virus (HIV) reservoir during suppressive antiretroviral therapy (ART) among 48 men who have sex with men (MSM) with primary or recent HIV infection, followed up over 2 years after ART initiation.

      • Hepatitis
      • Viruses
  25. Simultaneous Evaluation of Diagnostic Assays for Pharyngeal and Rectal Neisseria gonorrhoeae and Chlamydia trachomatis Using a Master Protocol

    • Clinical Infectious Diseases
    • Background Pharyngeal and rectal Neisseria gonorrhoeae and Chlamydia trachomatis play important roles in infection and antibacterial resistance transmission, but no US Food and Drug Administration (FDA)–cleared assays for detection at these sites existed prior to this study. The objective was to estimate performance of assays to detect those infections in pharyngeal and rectal specimens to support regulatory submission.