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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 276 - 300 of 560

  1. Capreomycin resistance prediction in two species of Mycobacterium using a stacked ensemble method

    • Journal of Applied Microbiology
    • Aims Predicting bacterial resistance provides valuable information that can assist in clinical decisions. With recent advances in whole genome sequencing technology, the detection of antibiotic resistance (AR) proteins directly from genomic data is becoming feasible. AR genes/proteins can be identified using best‐hit methods that work by comparing candidate sequences with known AR genes in public databases.

  2. Immuno‐detection and differentiation of Listeria monocytogenes and Listeria ivanovii in stone fruits

    • Journal of Applied Microbiology
    • Aims The aim of this study was to develop a rapid detection and differentiation method for pathogenic Listeria species in stone fruits. Methods and Results We utilized activated charcoal enrichment media (ACM) to induce overexpression and hypersecretion of pathogenic Listeria virulence proteins which can subsequently be detected via immunoblot analysis. Plum and nectarine slices spiked with either L. monocytogenes or L.

      • Listeria monocytogenes
      • Bacterial pathogens
      • Bacterial pathogens
      • Listeria monocytogenes
      • Listeria monocytogenes
      • Bacterial pathogens
  3. Methylsulfonylmethane exhibits bacteriostatic inhibition of Escherichia coli, and Salmonella enterica Kinshasa, in vitro

    • Journal of Applied Microbiology
    • Aims To evaluate antibacterial properties of Methylsulfonylmethane (MSM) on Escherichia coli (MDRE21) and Salmonella enterica serovar Kinshasa (SK132). Methods and Results Bacterial proliferation analysis was measured spectrophotometrically during log phase growth with 0, 3, 5, 7, 10, 12 and 16% MSM. To assess the mechanism of inhibition, cultures were grown overnight with 0–16% MSM and enumerated on unmedicated Brain Heart Infusion Agar (BHIA) or BHIA with 0–16 % MSM.

      • Salmonella
      • Salmonella
      • Bacterial pathogens
      • Bacterial pathogens
      • Salmonella
      • Bacterial pathogens
  4. Detection of Campylobacter spp. in water by dead‐end ultrafiltration and application at farm level

    • Journal of Applied Microbiology
    • Aims The purposes were to evaluate the detection of low levels of Campylobacter in water by dead‐end ultrafiltration (DEUF) to determine the sensitivity and suitability for use under field condition. Methods and Results The DEUF technique followed by detection according to ISO 10272 was tested on artificially and naturally contaminated water.

      • Campylobacter
      • Campylobacter
      • Bacterial pathogens
      • Bacterial pathogens
  5. Probiotic effect of Bifidobacterium longum 51A and Weissella paramesenteroides WpK4 on gerbils infected with Giardia lamblia

    • Journal of Applied Microbiology
    • Aims The objective of this study was to assess the probiotic potential of genuine strains of Bifidobacterium longum 51A and Weissella paramesenteroides WpK4, in experimental giardiasis. Methods and Results The bacteria were administered orally to gerbils (Meriones unguiculatus) 10 days before oral infection with trophozoites of Giardia lamblia.

      • Giardia lamblia
      • Parasites
      • Giardia lamblia
      • Parasites
  6. Norovirus and human adenovirus occurrence and diversity in recreational water in a karst aquifer in the Yucatan Peninsula, Mexico

    • Journal of Applied Microbiology
    • Aims To determine the seasonal occurrence and diversity of norovirus (NoV) and human adenovirus (HAdV) in groundwater from sinkholes, and brackish water used for recreational activities in the karst aquifer of the Yucatan Peninsula, Mexico. Methods and results Hollow fibre ultrafiltration was used to concentrate viruses and standard plaque assay methods were used to enumerate somatic and F+ specific coliphages as viral indicators.

      • Norovirus
      • Viruses
  7. First report of Escherichia coli O157:H7 in ready‐to‐eat sushi

    • Journal of Applied Microbiology
    • Aims The aim of this study was to evaluate the microbiological quality of commercially prepared RTE sushi by enumerating aerobic mesophilic bacteria (AMB) and thermotolerant coliforms (TC) and detecting Escherichia coli and Salmonella spp. An isolate was identified as E. coli O157:H7 which was evaluated for its virulence and antimicrobial resistance profiling as well as its ability to form biofilms on stainless steel.

      • Escherichia coli O157:H7
      • Bacterial pathogens
      • Salmonella
  8. Identification of staphylococci causing mastitis in dairy cattle from Algeria and characterization of Staphylococcus aureus

    • Journal of Applied Microbiology
    • Aims This study was conducted to determine the occurrence of staphylococci from cows with subclinical mastitis from independent herds in Algeria, and to characterize Staphylococcus aureus isolates. Methods and Results Quarter milk samples were collected separately, somatic cells were counted and samples with more than 200 000 somatic cells per ml were cultured on blood agar. Staphylococci isolates were identified by routine diagnostics, and S.

      • Staphylococcus aureus
      • Staphylococcus aureus
      • Bacterial pathogens
      • Staphylococcus aureus
      • Bacterial pathogens
      • Bacterial pathogens
  9. Bacterial diversity on stainless steel surfaces of egg processing companies and potential of selected isolates to spoil liquid whole egg products

    • Journal of Applied Microbiology
    • Aims To assess the bacterial diversity in the French egg processing industry and to explore the adhesion and spoilage potential of selected bacteria. Methods and Results Sterile stainless steel chips were suspended for 2 months inside the pipelines of seven egg processing companies, before and after the pasteurizer, at warm and cold seasons. After exposure, the bacterial diversity was assessed by 16S rDNA sequencing.

      • Staphylococcus aureus
      • Bacterial pathogens
  10. Distribution of bacteria between different milk fractions, investigated using culture‐dependent methods and molecular‐based and fluorescent microscopy approaches

    • Journal of Applied Microbiology
    • Aims To develop a protocol for DNA extraction using whole milk and further, to investigate how the use of whole instead of skimmed milk during DNA extraction affected the resulting microbial composition.

      • Staphylococcus aureus
      • Staphylococcus aureus
      • Bacterial pathogens
      • Bacterial pathogens
  11. Antibiotic‐resistant Staphylococcus aureus strains of swine origin: molecular typing and susceptibility to oregano (Origanum vulgare L.) essential oil and maqui (Aristotelia chilensis (Molina) Stuntz) extract

    • Journal of Applied Microbiology
    • Aim The molecular typing and the susceptibility of Staphylococcus aureus strains of swine origin to antibiotics, oregano (Origanum vulgare L.) essential oil (EO) and Chilean blackberry maqui (Aristotelia chilensis (Molina) Stuntz) extract were determined. Methods and Results Twenty S. aureus strains of swine origin were subjected to molecular typing, of which six strains were selected for antimicrobial susceptibility testing.

      • Staphylococcus aureus
      • Staphylococcus aureus
      • Bacterial pathogens
      • Bacterial pathogens
  12. Trends in the serovar and antimicrobial resistance in clinical isolates of Salmonella enterica from cattle and pigs between 2002 and 2016 in Japan

    • Journal of Applied Microbiology
    • Abstract

      Aims

      Given the significance of Salmonella enterica to both human and animal health, and a recent global dissemination of Salmonella 4,[5],12:i:‐, changes in the prevalent serovars and antimicrobial resistance in clinical isolates of Salmonella from cattle and pigs were investigated in Japan.

      • Salmonella
      • Bacterial pathogens
      • Salmonella
      • Bacterial pathogens
      • Salmonella
      • Bacterial pathogens
  13. Dynamic role of single‐celled fungi in ruminal microbial ecology and activities

    • Journal of Applied Microbiology
    • Abstract

  14. Source tracking on a dairy farm reveals a high occurrence of subclinical mastitis due to hypervirulent Listeria monocytogenes clonal complexes

    • Journal of Applied Microbiology
    • Abstract

      Aims

      An extensive source investigation was conducted on a dairy farm with neurolisteriosis and subclinical mastitis cases to identify infection source and potential transmission routes of Listeria monocytogenes.

      • Listeria monocytogenes
      • Bacterial pathogens
      • Bacterial pathogens
      • Listeria monocytogenes
      • Bacterial pathogens
      • Listeria monocytogenes
  15. Saccharomyces cerevisiae as a probiotic feed additive to non ‐ and pseudo ‐ruminant feeding: A Review

    • Journal of Applied Microbiology
    • Abstract

  16. Evaluation of structural changes and intracellular substances leakage of Escherichia coli O157:H7 induced by ohmic heating

    • Journal of Applied Microbiology
    • Abstract

      Aims

      To investigate the effects of ohmic heating (OH) and water bath heating (WB) on the membrane permeability, membrane structure, intracellular organization, and leakage of intracellular substances of E. coli O157:H7 at the same inactivation level and heating temperature of 72 °C.

      • Escherichia coli O157:H7
      • Bacterial pathogens
      • Escherichia coli O157:H7
      • Bacterial pathogens
  17. Antibiotic resistance and virulence genes in nisin‐resistant Enterococcus faecalis isolated from raw buffalo milk modulate the innate functions of rat macrophages

    • Journal of Applied Microbiology
    • Abstract

      Aims

      To elucidate the antibiotic resistance and virulence genes of nisin‐resistant Enterococcus faecalis isolated from raw buffalo milk and to study the effect of nisin‐sensitive and ‐resistant E. faecalis on the innate immunity of rats.

  18. Lactocin AL705 as quorum sensing inhibitor to control Listeria monocytogenes biofilm formation

    • Journal of Applied Microbiology
    • Abstract

      Aims

      The control of Listeria monocytogenes biofilm formation using lactocin AL705 bacteriocin at sub‐minimum inhibitory concentrations (MICs) through an antiquorum sensing strategy, was preliminarily investigated.

      • Listeria monocytogenes
      • Vibrio
      • Bacterial pathogens
      • Listeria monocytogenes
      • Bacterial pathogens
  19. Enterotoxin gene profile and molecular epidemiology of Aeromonas species from fish and diverse water sources

    • Journal of Applied Microbiology
    • Abstract

      Aims

      This investigation was undertaken to study the prevalence, enterotoxin gene profile and molecular epidemiology of Aeromonads from various sources of water (182) and fish (173).

      • Bacterial pathogens
      • Bacterial pathogens
  20. Effects of Lactococcus lactis MG1363 producing fusion proteins of bovine lactoferricin–lactoferrampin on growth, intestinal morphology and immune function in weaned piglet

    • Journal of Applied Microbiology
    • Abstract

      Aims

      We developed a strategy for localized delivery of the LFCA (lactoferricinlactoferrampin), which is actively synthesized in situ by Lactococcus lactis (pAMJ399‐LFCA/LLMG1363), and explored the possibility of using pAMJ399‐LFCA/LLMG1363 as an alternative additive diet to antibiotics.

      • Staphylococcus aureus
      • Bacterial pathogens
  21. Antibiotic and heavy metal resistance genes in Aeromonas spp. isolated from marketed Manila Clam (Ruditapes philippinarum) in Korea

    • Journal of Applied Microbiology
    • Abstract

      Aims

      Manila clam (Ruditapes philippinarum) is one of the most popular seafood in Korea, owing to their unique taste and nutritional value. This study aimed to disclose the antibiotic and heavy metal resistance characteristics of Aeromonas spp. isolated from marketed Manila clam in Korea.

      • Heavy Metals
      • Chemical contaminants
  22. Cadmium‐affected synthesis of exopolysaccharides by rhizosphere bacteria

    • Journal of Applied Microbiology
    • Abstract

      Aim

      Study is focused on the influence of cadmium addition to growth media on production yield, their size and molecular mass of exopolysaccharides (EPS) synthesized by three rhizosphere bacteria strains. Inhibition of bacterial growth by increasing concentrations of Cd2+ was also analysed.

      • Heavy Metals
      • Chemical contaminants
  23. Activity evaluation of pure and doped zinc oxide nanoparticles against bacterial pathogens and Saccharomyces cerevisiae

    • Journal of Applied Microbiology
    • Abstract

      Aims

      This work aimed to evaluate the antimicrobial activity of pure (ZnO) and doped (ZnMgO) zinc oxide nanoparticles on bacterial pathogens and Saccharomyces cerevisiae to confirm their applicability as an alternative to antibiotics and to estimate their biocompatibility.

      • Staphylococcus aureus
      • Listeria monocytogenes
      • Staphylococcus aureus
      • Bacterial pathogens
      • Listeria monocytogenes
      • Staphylococcus aureus
      • Bacterial pathogens
      • Salmonella
      • Bacterial pathogens
      • Listeria monocytogenes
  24. Antibiotic‐resistant Staphylococcus aureus strains of swine origin: molecular typing and susceptibility to oregano (Origanum vulgare L.) essential oil and maqui [Aristotelia chilensis (Molina) Stuntz] extract

    • Journal of Applied Microbiology
    • Abstract

      Aim

      The molecular typing and the susceptibility of Staphylococcus aureus strains of swine origin to antibiotics, oregano (Origanum vulgare L.) essential oil (EO), and Chilean blackberry maqui [Aristotelia chilensis (Molina) Stuntz] extract were determined.

      • Staphylococcus aureus
      • Bacterial pathogens
  25. Modeling inactivation of wild‐type and clinical Escherichia coli O26 strains using UV‐C and thermal treatment and subsequent persistence in simulated gastric fluid

    • Journal of Applied Microbiology
    • Abstract

      Aims

      First, two inactivation models were compared for different phenotypic profiles of Escherichia coli O26 using UV‐C light (UV‐C) and thermal treatment (T), by means of Central Composite Rotatable Design of Experiment (CCRD). Second, we aimed to evaluate subsequent survival and persistence of cells in simulated gastric fluid (SGF).

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens