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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 226 - 250 of 560

  1. Enhancing the degradation of mixed polycyclic aromatic hydrocarbon and medium‐chain‐length polyhydroxyalkanoate production by mixed bacterial cultures using modified repeated batch fermentation

    • Journal of Applied Microbiology
    • Aims To increase biodegradation of phenanthrene (PHE), pyrene (PYR) and fluoranthene (FLU) through mixed cultures of polycyclic aromatic hydrocarbon (PAH)‐degrading bacteria, using modified repeated batch fermentation. Methods and Results Novel bacterial strains of Pseudomonas putida, Pseudomonas sp. and Ralstonia eutropha were cultivated and the biodegradation and conversion of mixed PAH to medium chain length‐polyhydroxyalkanoates (MCL‐PHA) was determined.

      • Chemical contaminants
  2. Whole genome sequence analysis and in vitro probiotic characteristics of a Lactobacillus strain Lactobacillus paracasei ZFM54

    • Journal of Applied Microbiology
    • Aim The aim was to identify a Lactobacillus strain with potential probiotic characteristics by whole genome sequence analysis and in vitro experimental studies. Methods and Results The whole genome sequencing was carried out using PacBio RSII sequencing method and Illumina's paired‐end sequencing technology. Gene prediction and annotation was achieved using GlimmerVersion 3.02 and NCBI prokaryotic Genome Annotation Pipeline.

  3. Experimental evaluation of survival of Vibrio parahaemolyticus in fertilized cold‐water sediment

    • Journal of Applied Microbiology
    • Aims This experimental study focuses on survival and consistence of Vibrio parahaemolyticus in cold water sediments and how increasing temperature and nutritional availability can affect growth. Methods and Results A pathogenic strain of V. parahaemolyticus was inoculated in seawater microcosms containing bottom sediment. Gradually, during 14 days, the temperature was upregulated from 8 to 21°C. Culturable V.

      • Vibrio
      • Bacterial pathogens
  4. Characterization of Salmonella bacteriophages and their potential use in dishwashing materials

    • Journal of Applied Microbiology
    • Aims The aims of this study were to isolate and characterize novel Salmonella phages and evaluate the effectiveness of phage cocktails used as antibacterial agents in dishwashing materials. Methods and Results The effective phages, vB_STy‐RN5i1 and vB_STy‐RN29, were isolated from drain water samples collected from open markets using S. Typhimurium as the host strain. These phages were identified as members of Podoviridae and Siphoviridae, respectively.

      • Salmonella
      • Bacterial pathogens
  5. Development of a novel selective agar for the isolation and detection of Bacillus anthracis

    • Journal of Applied Microbiology
    • Aims The aim of this study was to develop a novel selective agar for the specific isolation and detection of Bacillus anthracis. Methods and Results Based on published data on antibiotic resistance and susceptibility of B. anthracis and other closely related species of the Bacillus cereus sensu lato group, a new selective agar formulation termed CEFOMA (Bacillus CEreus sensu lato group specific antibiotics, FOsfomycin, MAcrolides) was developed and evaluated. All tested strains of B.

      • Bacillus cereus
  6. Changes in cellular structure of heat‐treated Salmonella in low‐moisture environments

    • Journal of Applied Microbiology
    • Aims Salmonella cells desiccated in an environment with low‐water activity (aw) show longer survival times and enhanced resistance to heat. However, little is known about the cellular ultrastructure of Salmonella in low‐aw environment in relation to the survival and persistence during desiccation.

      • Bacterial pathogens
      • Salmonella
  7. Isolation of swine‐derived Lactobacillus plantarum and its synergistic antimicrobial and health‐promoting properties with ZnO nanoparticles

    • Journal of Applied Microbiology
    • Aims The purpose of this study was to isolate Lactobacillus from gastrointestinal tract of healthy post‐weaning piglets and investigate its synergistic antimicrobial and probiotic effects with ZnO nanoparticles (nZnO). Methods and Results Out of the 128 isolates, L. plantarum BLPL03 was selected based on its excellent acid and bile salt tolerance properties. L.

      • Clostridium perfringens
      • Escherichia coli O157:H7
      • Listeria monocytogenes
      • Salmonella
      • Staphylococcus aureus
      • Bacterial pathogens
  8. Variation in Growth and Evaluation of Cross‐Protection in Listeria monocytogenes under Salt and Bile Stress

    • Journal of Applied Microbiology
    • Aims Exposure of Listeria monocytogenes to osmotic stress can induce increased resistance to subsequent lethal exposure to cell envelope stressors, such as nisin and bile salts. We wanted to determine if similar cross‐protection phenotypes could occur when L. monocytogenes strains were treated with osmotic stress and exposed to sub‐lethal levels of the cell envelope stressor, bile. Method and Results Growth phenotypes were measured for six L.

      • Listeria monocytogenes
      • Bacterial pathogens
  9. Heat and Chlorine Resistance of a Soil Acanthamoeba sp. Cysts in Water

    • Journal of Applied Microbiology
    • Aims The study established the inactivation kinetic parameters of an Acanthamoeba cyst isolate subjected to heating and chlorination. Methods and Results A strain of Acanthamoeba was isolated and purified from an area surrounding a pilot food plant. Mature cysts (14 d) were subjected to heat inactivation studies at 71, 76, 81, 86, and 91 °C; and chlorination at 100, 200, 300, 400, and 500 ppm.

  10. Radiosensitivity increase of FCV‐F9 virus using combined treatments with natural antimicrobials and γ‐irradiation

    • Journal of Applied Microbiology
    • Aims Evaluate the possible synergistic effect of cranberry juice (CJ) and commercial citrus extract (BS) against FCV‐F9 viral titer in‐vitro in combination with γ‐irradiation to determinate the D10 values and radiosensitivity increase. Methods and Results Virus samples were treated with a formulation containing a mixture of BS or CJ. Results showed a D10 of 0.05 %, 0.42 % and 1.34 kGy for the virus treated with the BS, the CJ and the irradiation alone, respectively.

  11. Detection of antibiotic resistance and virulence genes of Vibrio strains isolated from ready‐to‐eat shrimps in Delta and Edo States, Nigeria

    • Journal of Applied Microbiology
    • Aim The current study was conducted to determine the incidence, antibiotic resistance and virulence genes of Vibrio strains isolated from ready‐to‐eat shrimps in Edo and Delta States, Nigeria. Methods and Results A total of 1440 ready‐to‐eat shrimp's samples were obtained from open markets from November 2016 to October 2017 and analysed using standard culture‐based procedures.

      • Vibrio
      • Bacterial pathogens
  12. Propidium Monoazide Conventional PCR and DNA Sequencing: Detection of Negative Culture Bacterial Pathogens Causing Subclinical Mastitis

    • Journal of Applied Microbiology
    • Aims This study was conducted to early detect the negative culture bacterial pathogens causing subclinical mastitis for the fast diagnosis of the disease and the reduction of some milk transmitted pathogenic bacteria to human consumers. Methods and Results A total of 171 positive California mastitis test (CMT) milk samples collected from asymptomatic dairy cows in Sharkia Governorate, Egypt were examined by conventional bacteriological methods.

      • Staphylococcus aureus
      • Bacterial pathogens
      • Bacillus cereus
  13. Fluoroquinolone resistance in Haemophilus influenzae from nursing home residents in Taiwan: correlation of MICs and mutations in QRDRs

    • Journal of Applied Microbiology
    • Aims To study association between number and positions of mutations with MICs of fluoroquinolone non‐susceptible Haemophilus influenzae. Methods and Results More than 40% of 48 H. influenzae isolated from nursing home residents were not susceptible to fluoroquinolone. Amino acid changes in the quinolone resistance determining regions, and correlation with MICs and inhibition zone diameters were analyzed.

  14. An improved cleaning system to reduce microbial contamination of poultry transport crates in the UK

    • Journal of Applied Microbiology
    • Aim Following previous research on improving the cleaning of crates used to transport broiler chickens from the farm to the abattoir, a demonstration project was undertaken to investigate improvements in crate washing on a commercial scale. Methods and Results The soak tank of a conventional crate washing system was replaced with a high‐performance washer fitted with high‐volume, high‐pressure nozzles.

      • Campylobacter
      • Bacterial pathogens
  15. Screening of natural lactic acid bacteria with potential effect on silage fermentation, aerobic stability and aflatoxin B1 in hot and humid area

    • Journal of Applied Microbiology
    • Aim To effectively make high‐quality silage in hot and humid area. Methods and Results The natural lactic acid bacteria (LAB) strains CZ149, XH358, XH753, and XH761 isolated from corn and Napier grass were screened by the potential of low pH growth and high lactic acid production, and their effect on silage quality, aerobic stability and aflatoxin B1 production of whole‐crop corn were also studied in Sichuan, China.

      • Aflatoxins
      • Natural toxins
  16. Assessing the quality of fresh Whitemouth croaker (Micropogonias furnieri) meat based on microorganism and histamine analysis using NGS, qPCR and HPLC‐DAD

    • Journal of Applied Microbiology
    • Aims Assessment the quality of fresh whitemouth croaker (Micropogonias furnieri) collected in different seasons the through quantification of histamine‐forming bacteria, determination of histamine content, and characterization of microorganism communities. Methods and Results The histamine content of fresh whitemouth croaker was detected by HPLC‐DAD with a concentration ranging from 258.52 to 604.62 mg kg‐1 being observed.

      • Bacterial pathogens
  17. Antibiotic resistance of Salmonella strains from layer poultry farms in central Ecuador

    • Journal of Applied Microbiology
    • Aims This study evaluated the antimicrobial resistance of Salmonella enterica strains from layer poultry farms in central Ecuador isolated during 2017. This geographical area is responsible for around 60% of total domestic egg production, yet, as of 2019, no reports had been published on the phenotypic and genotypic antibiotic resistance patterns of Salmonella in the layer poultry farms of this area.

      • Salmonella
      • Bacterial pathogens
  18. Development of a selective and differential media for the isolation and enumeration of Bacillus cereus from food samples

    • Journal of Applied Microbiology
    • Aim Identification and enumeration of foodborne pathogens in food stuffs are valuable concerns. In the present study, starch‐blood‐egg yolk‐polymyxin B‐trimethoprim‐ceftazidime (SBYPTC) agar was established to isolate and specify the number of B. cereus in food products. Methods and results The effectiveness of the developed medium in selecting for B.

      • Bacillus cereus
  19. Microbial pathogen removal from domestic effluent using coral sand in Kiribati

    • Journal of Applied Microbiology
    • Aim Infiltration experiments aimed to show the effectivity of coral sand to remove microorganisms in septic tank wastewater treatment system, in South Tarawa, Kiribati. Methods and Results Laboratory experiments evaluated effective microbial removal properties of a packed bed of coral beach sand conditioned with domestic effluent.

      • Bacterial pathogens
      • Viruses
      • Norovirus
  20. Streptomyces‐derived actinomycin D inhibits biofilm formation via downregulating ica locus and decreasing production of PIA in Staphylococcus epidermidis

    • Journal of Applied Microbiology
    • Aim The objective of this study was to investigate the biofilm inhibitory activity of Streptomyces‐derived actinomycin D against biofilm formation by Staphylococcus epidermidis. Methods and Results The microtiter plate method and microscopy were used to detect the biofilm formation of S. epidermidis. And an attempt was made to detect the effect of actinomycin D on important biofilm components, exopolysaccharides (EPS) in S. epidermidis using precolumn derivation HPLC.

      • Staphylococcus aureus
      • Bacterial pathogens
  21. Promising applications of cold plasma for microbial safety, chemical decontamination and quality enhancement in fruits

    • Journal of Applied Microbiology
    • Consumers’ demand is increasing for safe foods without impairing the phytochemical and sensory quality. In turn, it has increased research interest in the exploration of innovative food processing technologies. Cold plasma technology is getting popularity now days owing to its high efficacy in decontamination of microbes in fruit and fruit based products. As a on‐thermal approach, plasma processing maintains the quality of fruits and minimizes the thermal effects on nutritional properties.

      • Pesticide residues
      • Chemical contaminants
  22. Evaluation of process involved in the production of aromatic compounds in Gram‐negative bacteria isolated from vanilla (Vanilla planifolia ex. Andrews) beans

    • Journal of Applied Microbiology
    • Aim The present investigation was aimed at isolating and identifying bacterial strains from cured vanilla beans. Additionally, the study focused on evaluating bacterial processes pertaining to the aromatic compounds production (ACP). Methods and Results Three bacteria were isolated from Vanilla planifolia beans, previously subjected to the curing process.

      • Bacterial pathogens
  23. Pathogen displacement during intermittent catheter insertion: a novel in vitro urethra model

    • Journal of Applied Microbiology
    • Aim To develop a novel in vitro urethra model and use it to determine if insertion of an intermittent urinary catheter (IC) displaces pathogenic bacteria from the urethral meatus along the urethra. Methods Displacement of microbial growth after catheter insertion was assessed using a novel in vitro urethra model.

  24. Detection and Identification of a Protein Biomarker in Antibiotic Resistant E. coli using intact protein LC Offline MALDI‐MS and MS/MS

    • Journal of Applied Microbiology
    • Aims The identification and differentiation of antibiotic resistant bacteria by MALDI‐TOF‐MS profiling remains a challenge due to the difficulty in detecting unique protein biomarkers associated with this trait.

      • Bacterial pathogens
  25. A novel, rapid and simple method for detecting brucellosis based on rapid vertical flow technology

    • Journal of Applied Microbiology
    • Aims To prevent the spread of brucellosis, a simple and rapid vertical flow technology for the detection of antibodies targeting brucellosis was developed. Methods and Results In this study, Brucella spp. lipopolysaccharide (LPS) was purified and used to detect brucellosis antibodies. Sheep IgG was used as a negative control. Colloidal gold‐labeled recombinant staphylococcus aureus protein A was sprayed on a fiberglass membrane to prepare an immunogold pads.

      • Staphylococcus aureus
      • Bacterial pathogens